TissueCFM000015's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| xylogalacturonan biosynthesis | 0.008126685 | plantCyc |
| positive regulation of proteasomal protein catabolic process | 0.009737232 | GO:1901800 |
| positive regulation of RNA polymerase II transcriptional preinitiation complex assembly | 0.009737232 | GO:0045899 |
| ER-associated ubiquitin-dependent protein catabolic process | 0.012315805 | GO:0030433 |
| TBP-class protein binding | 0.019170049 | GO:0017025 |
| proteasome-activating ATPase activity | 0.019170049 | GO:0036402 |
| nuclear proteasome complex | 0.020195719 | GO:0031595 |
| proteasome regulatory particle, base subcomplex | 0.020195719 | GO:0008540 |
| cytosolic proteasome complex | 0.020195719 | GO:0031597 |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.03702786 | cazy family |
| mRNA surveillance pathway | 0.044081648 | KEGG pathway |
| Proteasome | 0.044081648 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000036 | AT1G17270 (0) | O-fucosyltransferase family protein |
| CRO_T001833 | - | - |
| CRO_T005049 | - | - |
| CRO_T007625 | AT1G13320 (0) | PP2AA3|protein phosphatase 2A subunit A3 |
| CRO_T010258 | - | - |
| CRO_T011631 | AT4G38040 (3.00E-23) | Exostosin family protein |
| CRO_T017246 | - | - |
| CRO_T021276 | - | - |
| CRO_T027780 | - | - |
| CRO_T028936 | - | - |
| CRO_T029992 | - | - |
| CRO_T031772 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000026 | UDP-L-arabinose biosynthesis I (from UDP-xylose) positive regulation of RNA polymerase II transcriptional preinitiation complex assembly galactose metabolic process positive regulation of proteasomal protein catabolic process ER-associated ubiquitin-dependent protein catabolic process UDP-sugars interconversion xylogalacturonan biosynthesis nuclear proteasome complex cytosolic proteasome complex proteasome regulatory particle, base subcomplex proteasome-activating ATPase activity UDP-glucose 4-epimerase activity TBP-class protein binding phosphatidylinositol binding formation of glycosidic bonds, GlycosylTransferases: GTnc Amino sugar and nucleotide sugar metabolism Proteasome | details |
| TissueCFM000396 | 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis histone methyltransferase activity (H3-K36 specific) red or far-red light signaling pathway regulation of circadian rhythm entrainment of circadian clock response to red light histone H3-K36 methylation histone H3-K36 demethylation photoperiodism, flowering positive regulation of circadian rhythm xylogalacturonan biosynthesis Circadian rhythm Thiamine metabolism formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription regulator: Jumonji regulation of flower development Glutathione metabolism metallopeptidase activity protein homodimerization activity | details |
| TissueCFM000662 | enzyme-directed rRNA pseudouridine synthesis xylogalacturonan biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc nucleotide binding deaminase activity pseudouridine synthase activity | details |
| TissueCFM000847 | formation of glycosidic bonds, GlycosylTransferases: GTnc Glutathione metabolism phosphomannomutase activity GDP-glucose biosynthesis GDP-mannose biosynthesis glucose and glucose-1-phosphate degradation UDP-glucose biosynthesis L-ascorbate biosynthesis I (L-galactose pathway) starch biosynthesis sucrose biosynthesis II xylogalacturonan biosynthesis metallopeptidase activity DNA-directed RNA polymerase activity 90S preribosome maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | details |
Expression profiles
 Show details about module gene expression profiling |