TissueCFM000847's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.006191018 | cazy family |
| Glutathione metabolism | 0.007954002 | KEGG pathway |
| phosphomannomutase activity | 0.008096328 | GO:0004615 |
| GDP-glucose biosynthesis | 0.011557661 | plantCyc |
| GDP-mannose biosynthesis | 0.011557661 | plantCyc |
| glucose and glucose-1-phosphate degradation | 0.011557661 | plantCyc |
| UDP-glucose biosynthesis | 0.011557661 | plantCyc |
| L-ascorbate biosynthesis I (L-galactose pathway) | 0.012027671 | plantCyc |
| starch biosynthesis | 0.012027671 | plantCyc |
| sucrose biosynthesis II | 0.012027671 | plantCyc |
| xylogalacturonan biosynthesis | 0.012027671 | plantCyc |
| metallopeptidase activity | 0.012137316 | GO:0008237 |
| DNA-directed RNA polymerase activity | 0.030939765 | GO:0003899 |
| 90S preribosome | 0.038591348 | GO:0030686 |
| maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 0.048650905 | GO:0000462 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T004390 | AT5G54090 (0) | DNA mismatch repair protein MutS, type 2 |
| CRO_T005345 | AT1G68990 (0) | MGP3|male gametophyte defective 3 |
| CRO_T007963 | AT5G17530 (0) | phosphoglucosamine mutase family protein |
| CRO_T011631 | AT4G38040 (3.00E-23) | Exostosin family protein |
| CRO_T018850 | AT1G63770 (0) | Peptidase M1 family protein |
| CRO_T024209 | AT4G30990 (0) | ARM repeat superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000015 | xylogalacturonan biosynthesis positive regulation of proteasomal protein catabolic process positive regulation of RNA polymerase II transcriptional preinitiation complex assembly ER-associated ubiquitin-dependent protein catabolic process TBP-class protein binding proteasome-activating ATPase activity nuclear proteasome complex proteasome regulatory particle, base subcomplex cytosolic proteasome complex formation of glycosidic bonds, GlycosylTransferases: GTnc mRNA surveillance pathway Proteasome | details |
| TissueCFM000026 | UDP-L-arabinose biosynthesis I (from UDP-xylose) positive regulation of RNA polymerase II transcriptional preinitiation complex assembly galactose metabolic process positive regulation of proteasomal protein catabolic process ER-associated ubiquitin-dependent protein catabolic process UDP-sugars interconversion xylogalacturonan biosynthesis nuclear proteasome complex cytosolic proteasome complex proteasome regulatory particle, base subcomplex proteasome-activating ATPase activity UDP-glucose 4-epimerase activity TBP-class protein binding phosphatidylinositol binding formation of glycosidic bonds, GlycosylTransferases: GTnc Amino sugar and nucleotide sugar metabolism Proteasome | details |
| TissueCFM000396 | 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis histone methyltransferase activity (H3-K36 specific) red or far-red light signaling pathway regulation of circadian rhythm entrainment of circadian clock response to red light histone H3-K36 methylation histone H3-K36 demethylation photoperiodism, flowering positive regulation of circadian rhythm xylogalacturonan biosynthesis Circadian rhythm Thiamine metabolism formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription regulator: Jumonji regulation of flower development Glutathione metabolism metallopeptidase activity protein homodimerization activity | details |
| TissueCFM000662 | enzyme-directed rRNA pseudouridine synthesis xylogalacturonan biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc nucleotide binding deaminase activity pseudouridine synthase activity | details |
| TissueCFM001074 | nucleolus small-subunit processome maturation of SSU-rRNA Ribosome biogenesis in eukaryotes 90S preribosome maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Spliceosome | details |
Expression profiles
 Show details about module gene expression profiling |