TissueCFM000104's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Arginine and proline metabolism | 0.005308548 | KEGG pathway |
| Transcription_related, Transcription factor: WRKY | 0.008658466 | TF family |
| carbon-nitrogen ligase activity, with glutamine as amido-N-donor | 0.013283142 | GO:0016884 |
| chaperone binding | 0.013283142 | GO:0051087 |
| aspartic-type endopeptidase activity | 0.016937828 | GO:0004190 |
| peptidyl-prolyl cis-trans isomerase activity | 0.016937828 | GO:0003755 |
| protein catabolic process | 0.027265933 | GO:0030163 |
| protein peptidyl-prolyl isomerization | 0.027265933 | GO:0000413 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002602 | AT3G25660 (1.00E-21) | Amidase family protein |
| CRO_T007986 | AT5G07220 (7.00E-64) | ATBAG3|BCL-2-associated athanogene 3 |
| CRO_T011013 | AT5G49520 (9.00E-21) | ATWRKY48|WRKY DNA-BINDING PROTEIN 48 |
| CRO_T018385 | AT1G73890 (4.00E-11) | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
| CRO_T025368 | AT3G44600 (5.00E-30) | CYP71|cyclophilin 71 |
| CRO_T026178 | AT2G42980 (2.00E-19) | Eukaryotic aspartyl protease family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM001444 | formaldehyde catabolic process endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) S-formylglutathione hydrolase activity formaldehyde oxidation II (glutathione-dependent) electron transport chain aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation oxidoreductase activity, acting on NAD(P)H carboxylic ester hydrolase activity protein peptidyl-prolyl isomerization peptidyl-prolyl cis-trans isomerase activity Viral carcinogenesis protein heterodimerization activity | details |
| TissueCFM001487 | Transcriptional misregulation in cancers positive regulation of cyclin-dependent protein serine/threonine kinase activity positive regulation of phosphorylation of RNA polymerase II C-terminal domain cyclin-dependent protein kinase holoenzyme complex positive regulation of transcription from RNA polymerase II promoter cyclin-dependent protein serine/threonine kinase regulator activity protein peptidyl-prolyl isomerization serine-type carboxypeptidase activity peptidyl-prolyl cis-trans isomerase activity formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
Expression profiles
 Show details about module gene expression profiling |