TissueCFM001444's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| formaldehyde catabolic process | 0.003218323 | GO:0046294 |
| endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 0.003218323 | GO:0000461 |
| endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 0.005362682 | GO:0000447 |
| S-formylglutathione hydrolase activity | 0.006436646 | GO:0018738 |
| formaldehyde oxidation II (glutathione-dependent) | 0.008863283 | plantCyc |
| electron transport chain | 0.014465341 | GO:0022900 |
| aerobic respiration I (cytochrome c) | 0.016203795 | plantCyc |
| aerobic respiration III (alternative oxidase pathway) | 0.016203795 | plantCyc |
| NAD/NADH phosphorylation and dephosphorylation | 0.016203795 | plantCyc |
| oxidoreductase activity, acting on NAD(P)H | 0.017689008 | GO:0016651 |
| carboxylic ester hydrolase activity | 0.018216961 | GO:0052689 |
| protein peptidyl-prolyl isomerization | 0.021832913 | GO:0000413 |
| peptidyl-prolyl cis-trans isomerase activity | 0.033692667 | GO:0003755 |
| Viral carcinogenesis | 0.035406011 | KEGG pathway |
| protein heterodimerization activity | 0.041006266 | GO:0046982 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T004715 | AT1G07790 (1.00E-17) | HTB1|Histone superfamily protein |
| CRO_T005206 | AT3G53890 (1.00E-05) | Ribosomal protein S21e |
| CRO_T005695 | AT5G67590 (8.00E-59) | FRO1|FROSTBITE1 |
| CRO_T014986 | AT5G02740 (2.00E-26) | Ribosomal protein S24e family protein |
| CRO_T025368 | AT3G44600 (5.00E-30) | CYP71|cyclophilin 71 |
| CRO_T026923 | AT2G41530 (6.00E-124) | ATSFGH|S-FORMYLGLUTATHIONE HYDROLASE |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000007 | details | |
| TissueCFM000104 | Arginine and proline metabolism Transcription_related, Transcription factor: WRKY carbon-nitrogen ligase activity, with glutamine as amido-N-donor chaperone binding aspartic-type endopeptidase activity peptidyl-prolyl cis-trans isomerase activity protein catabolic process protein peptidyl-prolyl isomerization | details |
| TissueCFM000238 | flavonoid 3',5'-hydroxylase activity phosphopantetheine binding primary shoot apical meristem specification anthocyanin-containing compound biosynthetic process oxidoreductase activity, acting on NAD(P)H FK506 binding aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) flavonoid biosynthesis (in equisetum) flavonol biosynthesis leucodelphinidin biosynthesis leucopelargonidin and leucocyanidin biosynthesis NAD/NADH phosphorylation and dephosphorylation syringetin biosynthesis electron transport chain chaperone-mediated protein folding protein peptidyl-prolyl isomerization peptidyl-prolyl cis-trans isomerase activity Ubiquitin_Proteasome_system, E3 adaptor: DWD Oxidative phosphorylation protein binding | details |
| TissueCFM000720 | Protein_kinases_phosphatases, PPC:1.1.1: Leucine-rich transmembrane protein kinase/Strubbelig Receptor Family 1 anthocyanin-containing compound biosynthetic process flavonoid 3',5'-hydroxylase activity electron transport chain oxidoreductase activity, acting on NAD(P)H hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) flavonoid biosynthesis (in equisetum) flavonol biosynthesis leucodelphinidin biosynthesis leucopelargonidin and leucocyanidin biosynthesis NAD/NADH phosphorylation and dephosphorylation syringetin biosynthesis Oxidative phosphorylation | details |
| TissueCFM001331 | formaldehyde oxidation II (glutathione-dependent) formaldehyde catabolic process S-formylglutathione hydrolase activity nuclear nucleosome Viral carcinogenesis chaperone-mediated protein folding nucleosome assembly protein peptidyl-prolyl isomerization triacylglycerol degradation carboxylic ester hydrolase activity FK506 binding lipid metabolic process peptidyl-prolyl cis-trans isomerase activity | details |
| TissueCFM001487 | Transcriptional misregulation in cancers positive regulation of cyclin-dependent protein serine/threonine kinase activity positive regulation of phosphorylation of RNA polymerase II C-terminal domain cyclin-dependent protein kinase holoenzyme complex positive regulation of transcription from RNA polymerase II promoter cyclin-dependent protein serine/threonine kinase regulator activity protein peptidyl-prolyl isomerization serine-type carboxypeptidase activity peptidyl-prolyl cis-trans isomerase activity formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
Expression profiles
 Show details about module gene expression profiling |