TissueCFM000123's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| hydrolysis of carbohydrate esters, Carbohydrate Esterases: CE8 | 0.000197819 | cazy family |
| pectinesterase inhibitor activity | 0.000233865 | GO:0046910 |
| aspartyl esterase activity | 0.000233865 | GO:0045330 |
| pectinesterase activity | 0.000239572 | GO:0030599 |
| pectin catabolic process | 0.000305249 | GO:0045490 |
| cell wall modification | 0.000305249 | GO:0042545 |
| negative regulation of catalytic activity | 0.000305249 | GO:0043086 |
| Pentose and glucuronate interconversions | 0.000363314 | KEGG pathway |
| transcription factor activity, RNA polymerase II transcription factor recruiting | 0.002257322 | GO:0001135 |
| regulation of secondary cell wall biogenesis | 0.003385733 | GO:2000652 |
| RNA polymerase II transcription factor activity, sequence-specific DNA binding | 0.003611182 | GO:0000981 |
| cell wall | 0.004341204 | GO:0005618 |
| Regulation of actin cytoskeleton | 0.006373082 | KEGG pathway |
| actin filament depolymerization | 0.007220229 | GO:0030042 |
| actin cytoskeleton | 0.010115924 | GO:0015629 |
| transcription regulatory region DNA binding | 0.012777323 | GO:0044212 |
| cell differentiation | 0.014278428 | GO:0030154 |
| lignin biosynthetic process | 0.018023919 | GO:0009809 |
| positive regulation of transcription, DNA-templated | 0.023631938 | GO:0045893 |
| actin binding | 0.02380149 | GO:0003779 |
| regulation of transcription from RNA polymerase II promoter | 0.023996409 | GO:0006357 |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.029388696 | cazy family |
| Transcription_related, Transcription factor: MYB | 0.029388696 | TF family |
| transferase activity, transferring glycosyl groups | 0.049346573 | GO:0016757 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T008539 | AT1G16490 (3.00E-56) | ATMYB58|MYB DOMAIN PROTEIN 58 |
| CRO_T024044 | AT2G37980 (3.00E-157) | O-fucosyltransferase family protein |
| CRO_T024326 | AT1G01750 (2.00E-66) | ADF11|actin depolymerizing factor 11 |
| CRO_T027933 | AT1G63520 (6.00E-18) | Protein of unknown function (DUF3527) |
| CRO_T028939 | AT3G05610 (4.00E-127) | Plant invertase/pectin methylesterase inhibitor superfamily |
| CRO_T030478 | AT3G05610 (8.00E-75) | Plant invertase/pectin methylesterase inhibitor superfamily |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000042 | hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription factor: MYB baicalein degradation (hydrogen peroxide detoxification) D-mannose degradation GDP-mannose biosynthesis mannitol biosynthesis quercetin sulfate biosynthesis superoxide radicals degradation UDP-L-arabinose biosynthesis II (from L-arabinose) wogonin metabolism reactive oxygen species degradation adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Protein_kinases_phosphatases, PPC:4.5.1: MAPK Family mannitol degradation II L-ascorbate biosynthesis I (L-galactose pathway) | details |
| TissueCFM000045 | DNA ligation involved in DNA repair protein ADP-ribosylation lagging strand elongation Base excision repair DNA integration DNA ligase (ATP) activity NAD+ ADP-ribosyltransferase activity | details |
| TissueCFM000174 | regulation of post-embryonic root development stem cell division regulation of ethylene biosynthetic process DNA ligation involved in DNA repair protein ADP-ribosylation lagging strand elongation cellular response to phosphate starvation Base excision repair NF-kappa B signaling pathway NAD+ ADP-ribosyltransferase activity monovalent cation:proton antiporter activity binding DNA ligase (ATP) activity protein binding, bridging regulation of pH Ubiquitin_Proteasome_system, SOCS/VHL/BC-box: 3-box Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII Ubiquitin_Proteasome_system, E3 adaptor: BTB | details |
| TissueCFM000221 | response to stress | details |
Expression profiles
 Show details about module gene expression profiling |