TissueCFM000174's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| regulation of post-embryonic root development | 0.013076723 | GO:2000069 |
| stem cell division | 0.013076723 | GO:0017145 |
| regulation of ethylene biosynthetic process | 0.013076723 | GO:0010364 |
| DNA ligation involved in DNA repair | 0.013076723 | GO:0051103 |
| protein ADP-ribosylation | 0.013076723 | GO:0006471 |
| lagging strand elongation | 0.013076723 | GO:0006273 |
| cellular response to phosphate starvation | 0.01680399 | GO:0016036 |
| Base excision repair | 0.02026907 | KEGG pathway |
| NF-kappa B signaling pathway | 0.02026907 | KEGG pathway |
| NAD+ ADP-ribosyltransferase activity | 0.020743074 | GO:0003950 |
| monovalent cation:proton antiporter activity | 0.020743074 | GO:0005451 |
| binding | 0.020743074 | GO:0005488 |
| DNA ligase (ATP) activity | 0.020743074 | GO:0003910 |
| protein binding, bridging | 0.020743074 | GO:0030674 |
| regulation of pH | 0.02203765 | GO:0006885 |
| Ubiquitin_Proteasome_system, SOCS/VHL/BC-box: 3-box | 0.022140209 | ubs family |
| Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII | 0.047251758 | kinase family |
| Ubiquitin_Proteasome_system, E3 adaptor: BTB | 0.047251758 | ubs family |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000031 | AT2G33320 (4.00E-33) | Calcium-dependent lipid-binding (CaLB domain) family protein |
| CRO_T007377 | AT2G02800 (3.00E-127) | APK2B|protein kinase 2B; Kin2|kinase 2 |
| CRO_T008859 | AT1G16380 (9.00E-42) | CHX1|CATION EXCHANGER 1 |
| CRO_T011864 | AT2G31320 (0) | PARP1|POLY(ADP-RIBOSE) POLYMERASE 1 |
| CRO_T012630 | AT5G42560 (2.00E-53) | Abscisic acid-responsive (TB2/DP1, HVA22) family protein |
| CRO_T015855 | AT1G04470 (0) | Protein of unknown function (DUF810) |
| CRO_T022785 | - | - |
| CRO_T025937 | AT3G51770 (0) | ATEOL1|ARABIDOPSIS ETHYLENE OVERPRODUCER 1; ETO1|ETHYLENE OVERPRODUCER 1 |
| CRO_T027933 | AT1G63520 (6.00E-18) | Protein of unknown function (DUF3527) |
| CRO_T031121 | AT5G35200 (3.00E-44) | ENTH/ANTH/VHS superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000042 | hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription factor: MYB baicalein degradation (hydrogen peroxide detoxification) D-mannose degradation GDP-mannose biosynthesis mannitol biosynthesis quercetin sulfate biosynthesis superoxide radicals degradation UDP-L-arabinose biosynthesis II (from L-arabinose) wogonin metabolism reactive oxygen species degradation adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Protein_kinases_phosphatases, PPC:4.5.1: MAPK Family mannitol degradation II L-ascorbate biosynthesis I (L-galactose pathway) | details |
| TissueCFM000045 | DNA ligation involved in DNA repair protein ADP-ribosylation lagging strand elongation Base excision repair DNA integration DNA ligase (ATP) activity NAD+ ADP-ribosyltransferase activity | details |
| TissueCFM000082 | lagging strand elongation DNA ligation involved in DNA repair actin cytoskeleton organization protein ADP-ribosylation Autophagy - yeast Base excision repair Cul3-RING ubiquitin ligase complex pollen tube tip pollen tube growth DNA ligase (ATP) activity NAD+ ADP-ribosyltransferase activity cytoplasm nucleus membrane Ubiquitin_Proteasome_system, E3 adaptor: F-box | details |
| TissueCFM000123 | hydrolysis of carbohydrate esters, Carbohydrate Esterases: CE8 pectinesterase inhibitor activity aspartyl esterase activity pectinesterase activity pectin catabolic process cell wall modification negative regulation of catalytic activity Pentose and glucuronate interconversions transcription factor activity, RNA polymerase II transcription factor recruiting regulation of secondary cell wall biogenesis RNA polymerase II transcription factor activity, sequence-specific DNA binding cell wall Regulation of actin cytoskeleton actin filament depolymerization actin cytoskeleton transcription regulatory region DNA binding cell differentiation lignin biosynthetic process positive regulation of transcription, DNA-templated actin binding regulation of transcription from RNA polymerase II promoter formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: MYB transferase activity, transferring glycosyl groups | details |
| TissueCFM000221 | response to stress | details |
| TissueCFM000393 | homogalacturonan biosynthesis DNA ligation involved in DNA repair lagging strand elongation protein ADP-ribosylation pectin biosynthetic process Base excision repair formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: TCP Ubiquitin_Proteasome_system, DUB: OTU | details |
| TissueCFM000531 | homogalacturonan biosynthesis DNA ligation involved in DNA repair protein ADP-ribosylation lagging strand elongation pectin biosynthetic process | details |
| TissueCFM000915 | formation of glycosidic bonds, GlycosylTransferases: GTnc negative regulation of nucleic acid-templated transcription regulation of jasmonic acid mediated signaling pathway regulation of defense response DNA ligation involved in DNA repair protein ADP-ribosylation lagging strand elongation response to wounding cellular macromolecule metabolic process potassium ion binding pyruvate kinase activity transcription corepressor activity DNA ligase (ATP) activity ubiquitin binding NAD+ ADP-ribosyltransferase activity ADP binding glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) Rubisco shunt xylan biosynthesis primary metabolic process glycolytic process Base excision repair defense response | details |
Expression profiles
 Show details about module gene expression profiling |