TissueCFM000336's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| protein insertion into ER membrane | 0.010598438 | GO:0045048 |
| protein demethylation | 0.010598438 | GO:0006482 |
| triphosphatase activity | 0.011794416 | GO:0050355 |
| endoribonuclease activity | 0.011794416 | GO:0004521 |
| BAT3 complex | 0.014133339 | GO:0071818 |
| RNA metabolic process | 0.030572508 | GO:0016070 |
| carboxylic ester hydrolase activity | 0.033353395 | GO:0052689 |
| vesicle docking | 0.036996028 | GO:0048278 |
| vesicle fusion | 0.043353114 | GO:0006906 |
| root development | 0.043353114 | GO:0048364 |
| SNAP receptor activity | 0.045761076 | GO:0005484 |
| SNARE binding | 0.045761076 | GO:0000149 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T005985 | AT1G14210 (1.00E-17) | Ribonuclease T2 family protein |
| CRO_T006021 | AT5G16830 (9.00E-42) | SYP21|syntaxin of plants 21 |
| CRO_T007696 | - | - |
| CRO_T015616 | AT5G46110 (4.00E-77) | APE2|ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2; TPT|triose-phosphate ⁄ phosphate translocator |
| CRO_T017656 | AT5G51960 (8.00E-34) | |
| CRO_T018187 | AT4G35360 (3.00E-53) | Uncharacterised conserved protein (UCP030210) |
| CRO_T020389 | AT5G40530 (2.00E-74) | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
| CRO_T024030 | AT3G07760 (9.00E-57) | Sterile alpha motif (SAM) domain-containing protein |
| CRO_T025389 | - | - |
| CRO_T026973 | AT2G11890 (4.00E-35) | TTM3|Triphosphate Tunnel Metalloenzyme 3 |
| CRO_T029177 | AT5G63220 (1.00E-125) | unknown protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000800 | acyl-CoA hydrolase activity pre-autophagosomal structure acyl-CoA metabolic process autophagosome assembly Autophagy - animal Fatty acid elongation acyl-CoA hydrolysis single-organism process cutin biosynthesis sporopollenin precursors biosynthesis suberin monomers biosynthesis | details |
| TissueCFM000801 | RNA transport Autophagy - animal MAPK signaling pathway autophagosome assembly DNA topological change Transcription_related, Transcription factor: NF-YC Transcription_related, Transcription factor: Trihelix pre-autophagosomal structure | details |
| TissueCFM000979 | Insulin resistance sucrose degradation III (sucrose invertase) mitotic spindle organization in nucleus protein insertion into ER membrane BAT3 complex regulation of protein phosphatase type 2A activity DNA topological change positive regulation of catalytic activity D-ribose metabolic process Fructose and mannose metabolism DNA topoisomerase type II (ATP-hydrolyzing) activity ribokinase activity DNA topoisomerase type I activity fructokinase activity protein tyrosine phosphatase activator activity protein phosphatase type 2A regulator activity carbohydrate phosphorylation protein phosphatase type 2A complex protein peptidyl-prolyl isomerization chromosome peptidyl-prolyl cis-trans isomerase activity response to abscisic acid | details |
| TissueCFM000991 | nonaprenyl diphosphate biosynthesis II pyridoxal 5'-phosphate salvage I endoribonuclease activity pyridoxal kinase activity pyridoxal 5'-phosphate salvage dimethylallyltranstransferase activity RNA metabolic process isoprenoid biosynthetic process Vitamin B6 metabolism Terpenoid backbone biosynthesis Ubiquitin_Proteasome_system, E3 adaptor: DWD RNA transport | details |
| TissueCFM001381 | SNARE interactions in vesicular transport cis-Golgi network Golgi medial cisterna SNARE binding SNAP receptor activity regulation of vesicle targeting, to, from or within Golgi Transcription_related, Transcription factor: FAR1 ER to Golgi vesicle-mediated transport vesicle fusion intra-Golgi vesicle-mediated transport protein transport SNARE complex Golgi membrane | details |
Expression profiles
 Show details about module gene expression profiling |