TissueCFM001381's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| SNARE interactions in vesicular transport | 0.006720188 | KEGG pathway |
| cis-Golgi network | 0.007082717 | GO:0005801 |
| Golgi medial cisterna | 0.007082717 | GO:0005797 |
| SNARE binding | 0.010344788 | GO:0000149 |
| SNAP receptor activity | 0.010344788 | GO:0005484 |
| regulation of vesicle targeting, to, from or within Golgi | 0.013029989 | GO:0048209 |
| Transcription_related, Transcription factor: FAR1 | 0.013753369 | TF family |
| ER to Golgi vesicle-mediated transport | 0.02534473 | GO:0006888 |
| vesicle fusion | 0.02534473 | GO:0006906 |
| intra-Golgi vesicle-mediated transport | 0.02534473 | GO:0006891 |
| protein transport | 0.025973479 | GO:0015031 |
| SNARE complex | 0.026245109 | GO:0031201 |
| Golgi membrane | 0.032242071 | GO:0000139 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000098 | - | - |
| CRO_T013357 | - | - |
| CRO_T017124 | AT2G45200 (6.00E-120) | GOS12|golgi snare 12 |
| CRO_T024030 | AT3G07760 (9.00E-57) | Sterile alpha motif (SAM) domain-containing protein |
| CRO_T028782 | AT2G43280 (7.00E-54) | Far-red impaired responsive (FAR1) family protein |
| CRO_T028966 | AT1G12790 (2.00E-77) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000336 | protein insertion into ER membrane protein demethylation triphosphatase activity endoribonuclease activity BAT3 complex RNA metabolic process carboxylic ester hydrolase activity vesicle docking vesicle fusion root development SNAP receptor activity SNARE binding | details |
| TissueCFM000466 | biotin biosynthesis from 8-amino-7-oxononanoate I Biotin metabolism biotin synthase activity methylated histone binding biotin biosynthetic process cullin deneddylation SNARE interactions in vesicular transport iron-sulfur cluster assembly COP9 signalosome intracellular ribonucleoprotein complex viral nucleocapsid 2 iron, 2 sulfur cluster binding iron-sulfur cluster binding zinc ion binding 4 iron, 4 sulfur cluster binding vesicle-mediated transport | details |
| TissueCFM000800 | acyl-CoA hydrolase activity pre-autophagosomal structure acyl-CoA metabolic process autophagosome assembly Autophagy - animal Fatty acid elongation acyl-CoA hydrolysis single-organism process cutin biosynthesis sporopollenin precursors biosynthesis suberin monomers biosynthesis | details |
| TissueCFM000801 | RNA transport Autophagy - animal MAPK signaling pathway autophagosome assembly DNA topological change Transcription_related, Transcription factor: NF-YC Transcription_related, Transcription factor: Trihelix pre-autophagosomal structure | details |
| TissueCFM000980 | Transcription_related, Transcription factor: NF-YC Transcription_related, Transcription factor: Trihelix peptidyl-proline hydroxylation to 4-hydroxy-L-proline Arginine and proline metabolism MAPK signaling pathway SNARE interactions in vesicular transport procollagen-proline 4-dioxygenase activity L-ascorbic acid binding | details |
| TissueCFM001003 | pre-autophagosomal structure COP9 signalosome cullin deneddylation autophagosome assembly Autophagy - animal SNARE interactions in vesicular transport ribonucleoside binding DNA-directed RNA polymerase activity vesicle-mediated transport | details |
Expression profiles
 Show details about module gene expression profiling |