TissueCFM000359's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Protein_kinases_phosphatases, PPC:1.5.3: Receptor Like Cytoplasmic Kinase IV | 0.006498781 | kinase family |
| MAPK signaling pathway | 0.017686282 | KEGG pathway |
| Plant-pathogen interaction | 0.033354878 | KEGG pathway |
| regulation of membrane potential | 0.034417436 | GO:0042391 |
| potassium ion transmembrane transport | 0.038019008 | GO:0071805 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T004095 | AT3G16270 (0) | ENTH/VHS family protein |
| CRO_T004675 | AT4G37210 (6.00E-33) | Tetratricopeptide repeat (TPR)-like superfamily protein |
| CRO_T007423 | AT5G39450 (2.00E-145) | F-box family protein |
| CRO_T013202 | AT4G09300 (5.00E-27) | LisH and RanBPM domains containing protein |
| CRO_T016058 | AT3G62240 (4.00E-51) | RING/U-box superfamily protein |
| CRO_T020780 | AT5G63870 (9.00E-48) | PP7|serine/threonine phosphatase 7 |
| CRO_T026335 | AT1G01340 (0) | ATCNGC10|cyclic nucleotide gated channel 10 |
| CRO_T027113 | AT1G51350 (1.00E-100) | ARM repeat superfamily protein |
| CRO_T029642 | AT1G34320 (0) | Protein of unknown function (DUF668) |
| CRO_T030961 | AT2G11520 (2.00E-130) | CRCK3|calmodulin-binding receptor-like cytoplasmic kinase 3 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000211 | chaperone-mediated protein folding Ubiquitin_Proteasome_system, E3 adaptor: BTB FK506 binding peptidyl-prolyl cis-trans isomerase activity | details |
| TissueCFM000311 | Cyanoamino acid metabolism Transcription_related, Transcription regulator: TAZ | details |
| TissueCFM000360 | transcriptional repressor complex autophagosome pre-autophagosomal structure piecemeal microautophagy of nucleus protein localization to pre-autophagosomal structure mitophagy late nucleophagy Cell cycle Protein_kinases_phosphatases, PPC:1.5.3: Receptor Like Cytoplasmic Kinase IV Autophagy - animal Insulin signaling pathway MAPK signaling pathway | details |
| TissueCFM000409 | Plant-pathogen interaction regulation of membrane potential potassium ion transmembrane transport peptidyl-tyrosine phosphorylation Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII voltage-gated potassium channel activity non-membrane spanning protein tyrosine kinase activity integral component of plasma membrane | details |
| TissueCFM000704 | transporter activity transport | details |
| TissueCFM001125 | 3-oxo-5-alpha-steroid 4-dehydrogenase activity sterol 5-alpha reductase activity progesterone 5-alpha-reductase activity brassinosteroid biosynthesis I brassinosteroid biosynthesis II protein phosphatase type 2A regulator activity protein phosphatase type 2A complex clathrin adaptor complex Brassinosteroid biosynthesis protein transporter activity regulation of protein phosphatase type 2A activity Endocytosis mRNA surveillance pathway brassinosteroid biosynthetic process | details |
| TissueCFM001240 | Protein_kinases_phosphatases, PPC:1.5.3: Receptor Like Cytoplasmic Kinase IV cytoskeleton cell wall organization or biogenesis | details |
| TissueCFM001298 | L-tryptophan biosynthesis Protein_kinases_phosphatases, PPC:1.5.3: Receptor Like Cytoplasmic Kinase IV Transcription_related, Transcription factor: CAMTA GMP biosynthetic process GMP synthase (glutamine-hydrolyzing) activity GMP synthase activity Transcription_related, Transcription factor: SBP Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase Ubiquitin_Proteasome_system, DUB: USP | details |
| TissueCFM001427 | vesicle-mediated transport intracellular protein transport transcriptional repressor complex Golgi apparatus part intracellular transport Cell cycle vacuolar transport Lysosome Transcription_related, Transcription factor: MYB-related very long chain fatty acid biosynthesis I membrane coat | details |
| TissueCFM001480 | Protein_kinases_phosphatases, PPC:1.5.3: Receptor Like Cytoplasmic Kinase IV L-tryptophan biosynthesis GMP synthase activity GMP synthase (glutamine-hydrolyzing) activity Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase GMP biosynthetic process ATP binding calmodulin-dependent protein kinase activity calcium-dependent protein serine/threonine kinase activity peptidyl-serine phosphorylation abscisic acid-activated signaling pathway protein autophosphorylation carbohydrate transport | details |
| TissueCFM001605 | Protein_kinases_phosphatases, PPC:1.5.3: Receptor Like Cytoplasmic Kinase IV Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase calcium-dependent protein serine/threonine kinase activity ATP binding calmodulin-dependent protein kinase activity protein autophosphorylation peptidyl-serine phosphorylation abscisic acid-activated signaling pathway | details |
| TissueCFM001660 | protein transporter activity rosmarinic acid biosynthesis I rosmarinic acid biosynthesis II hydroxyphenylpyruvate reductase activity 4-hydroxybenzoate biosynthesis I (eukaryotes) signal transduction oxidative photosynthetic carbon pathway glyoxylate reductase (NADP) activity hydroxypyruvate reductase activity protein phosphatase type 2A regulator activity protein import into nucleus, docking protein import into nucleus, translocation ribosomal protein import into nucleus regulation of protein phosphatase type 2A activity nuclear localization sequence binding Ran GTPase binding MAPK signaling pathway - fly NLS-bearing protein import into nucleus nuclear periphery protein phosphatase type 2A complex clathrin adaptor complex nuclear membrane nuclear envelope protein import into nucleus | details |
| TissueCFM001800 | DNA N-glycosylase activity base-excision repair Base excision repair | details |
Expression profiles
 Show details about module gene expression profiling |