TissueCFM001480's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Protein_kinases_phosphatases, PPC:1.5.3: Receptor Like Cytoplasmic Kinase IV | 0.003900421 | kinase family |
| L-tryptophan biosynthesis | 0.004602101 | plantCyc |
| GMP synthase activity | 0.011778793 | GO:0003921 |
| GMP synthase (glutamine-hydrolyzing) activity | 0.011778793 | GO:0003922 |
| Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase | 0.014112933 | kinase family |
| GMP biosynthetic process | 0.015419326 | GO:0006177 |
| ATP binding | 0.015777997 | GO:0005524 |
| calmodulin-dependent protein kinase activity | 0.03526856 | GO:0004683 |
| calcium-dependent protein serine/threonine kinase activity | 0.03526856 | GO:0009931 |
| peptidyl-serine phosphorylation | 0.040713554 | GO:0018105 |
| abscisic acid-activated signaling pathway | 0.040713554 | GO:0009738 |
| protein autophosphorylation | 0.040713554 | GO:0046777 |
| carbohydrate transport | 0.040713554 | GO:0008643 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001924 | AT1G70570 (0) | anthranilate phosphoribosyltransferase, putative |
| CRO_T002815 | AT4G28620 (3.00E-21) | ABCB24|ATP-binding cassette B24; ATATM2|ABC TRANSPORTER OF THE MITOCHONDRION 2 |
| CRO_T004367 | AT1G49580 (0) | Calcium-dependent protein kinase (CDPK) family protein |
| CRO_T005814 | AT1G35730 (3.00E-25) | APUM9|pumilio 9 |
| CRO_T022465 | AT1G21460 (2.00E-72) | AtSWEET1; SWEET1|Nodulin MtN3 family protein |
| CRO_T030961 | AT2G11520 (2.00E-130) | CRCK3|calmodulin-binding receptor-like cytoplasmic kinase 3 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000359 | Protein_kinases_phosphatases, PPC:1.5.3: Receptor Like Cytoplasmic Kinase IV MAPK signaling pathway Plant-pathogen interaction regulation of membrane potential potassium ion transmembrane transport | details |
| TissueCFM000360 | transcriptional repressor complex autophagosome pre-autophagosomal structure piecemeal microautophagy of nucleus protein localization to pre-autophagosomal structure mitophagy late nucleophagy Cell cycle Protein_kinases_phosphatases, PPC:1.5.3: Receptor Like Cytoplasmic Kinase IV Autophagy - animal Insulin signaling pathway MAPK signaling pathway | details |
| TissueCFM000630 | cellulose biosynthesis cellulose synthase (UDP-forming) activity cellulose biosynthetic process cell wall organization mRNA surveillance pathway carbohydrate homeostasis negative regulation of protein kinase activity sulfate transport cellular response to sucrose stimulus embryonic root morphogenesis protein dephosphorylation L-arabinose metabolic process plant-type primary cell wall biogenesis calcium ion transport osmosensory signaling pathway | details |
| TissueCFM001240 | Protein_kinases_phosphatases, PPC:1.5.3: Receptor Like Cytoplasmic Kinase IV cytoskeleton cell wall organization or biogenesis | details |
| TissueCFM001298 | L-tryptophan biosynthesis Protein_kinases_phosphatases, PPC:1.5.3: Receptor Like Cytoplasmic Kinase IV Transcription_related, Transcription factor: CAMTA GMP biosynthetic process GMP synthase (glutamine-hydrolyzing) activity GMP synthase activity Transcription_related, Transcription factor: SBP Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase Ubiquitin_Proteasome_system, DUB: USP | details |
| TissueCFM001605 | Protein_kinases_phosphatases, PPC:1.5.3: Receptor Like Cytoplasmic Kinase IV Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase calcium-dependent protein serine/threonine kinase activity ATP binding calmodulin-dependent protein kinase activity protein autophosphorylation peptidyl-serine phosphorylation abscisic acid-activated signaling pathway | details |
| TissueCFM001633 | Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase intrinsic component of membrane regulation of meristem structural organization glycerophospholipid metabolic process Base excision repair Glycerophospholipid metabolism diacylglycerol and triacylglycerol biosynthesis phosphatidylcholine acyl editing phospholipid remodeling (phosphatidylcholine, yeast) protein kinase binding DNA N-glycosylase activity O-acyltransferase activity base-excision repair plasma membrane calmodulin-dependent protein kinase activity calcium-dependent protein serine/threonine kinase activity | details |
| TissueCFM001682 | Protein_kinases_phosphatases, PPC:2.1.3: CTR1/EDR1 Kinase Protein_kinases_phosphatases, PPC:4.5.2: CDC2 Like Kinase Family gluconeogenesis I malate dehydrogenase (decarboxylating) (NAD+) activity carbohydrate transport malate metabolic process cobalt ion binding Carbon metabolism | details |
| TissueCFM001732 | Transcription_related, Transcription factor: CAMTA Transcription_related, Transcription factor: SBP Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase mRNA surveillance pathway protein phosphatase type 2A complex regulation of protein phosphatase type 2A activity abscisic acid-activated signaling pathway protein autophosphorylation peptidyl-serine phosphorylation calcium-dependent protein serine/threonine kinase activity protein phosphatase type 2A regulator activity calmodulin-dependent protein kinase activity intracellular signal transduction | details |
Expression profiles
 Show details about module gene expression profiling |