TissueCFM000389's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| ribonucleoside-diphosphate reductase complex | 0.003187248 | GO:0005971 |
| deoxyribonucleotide biosynthetic process | 0.004780873 | GO:0009263 |
| glucan catabolic process | 0.004780873 | GO:0009251 |
| hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc | 0.007774614 | cazy family |
| ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor | 0.011680882 | GO:0004748 |
| scopolin beta-glucosidase activity | 0.011680882 | GO:0102483 |
| beta-glucosidase activity | 0.020698662 | GO:0008422 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003135 | - | - |
| CRO_T003696 | - | - |
| CRO_T006422 | AT2G21790 (4.00E-60) | ATRNR1|RIBONUCLEOTIDE REDUCTASE LARGE SUBUNIT 1; CLS8|CRINKLY LEAVES 8; DPD2|defective in pollen organelle DNA degradation 2; R1|RIBONUCLEOTIDE REDUCTASE 1 |
| CRO_T006680 | - | - |
| CRO_T007481 | AT3G47000 (0) | Glycosyl hydrolase family protein |
| CRO_T008212 | - | - |
| CRO_T008819 | - | - |
| CRO_T013103 | - | - |
| CRO_T016604 | - | - |
| CRO_T027792 | - | - |
| CRO_T031420 | - | - |
| CRO_T032139 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000018 | hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc glucan catabolic process DNA recombination | details |
| TissueCFM000031 | glucan catabolic process hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc base-excision repair DNA N-glycosylase activity scopolin beta-glucosidase activity Base excision repair beta-glucosidase activity Starch and sucrose metabolism | details |
| TissueCFM000037 | deoxyribonucleotide biosynthetic process formation of glycosidic bonds, GlycosylTransferases: GTnc protein glycosylation ribonucleoside-diphosphate reductase complex ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor galactosyltransferase activity Purine metabolism carbohydrate binding | details |
| TissueCFM000049 | glucan catabolic process hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc scopolin beta-glucosidase activity beta-glucosidase activity Starch and sucrose metabolism | details |
| TissueCFM000055 | molybdenum cofactor biosynthesis | details |
| TissueCFM000088 | 3'(2'),5'-bisphosphate nucleotidase activity Sulfur metabolism sulfur compound metabolic process phosphatidylinositol phosphorylation magnesium ion binding dephosphorylation | details |
| TissueCFM000127 | Transcription_related, Transcription factor: BBR-BPC integral component of lumenal side of endoplasmic reticulum membrane Golgi-associated vesicle membrane integral component of cytoplasmic side of endoplasmic reticulum membrane lysosomal membrane ribonucleoside-diphosphate reductase complex membrane protein proteolysis signal peptide processing pollen germination deoxyribonucleotide biosynthetic process aspartic endopeptidase activity, intramembrane cleaving ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor | details |
| TissueCFM000401 | details |
Expression profiles
 Show details about module gene expression profiling |