TissueCFM000127's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Transcription_related, Transcription factor: BBR-BPC | 0.013268835 | TF family |
| integral component of lumenal side of endoplasmic reticulum membrane | 0.014458533 | GO:0071556 |
| Golgi-associated vesicle membrane | 0.014458533 | GO:0030660 |
| integral component of cytoplasmic side of endoplasmic reticulum membrane | 0.014458533 | GO:0071458 |
| lysosomal membrane | 0.016254323 | GO:0005765 |
| ribonucleoside-diphosphate reductase complex | 0.019484466 | GO:0005971 |
| membrane protein proteolysis | 0.031459105 | GO:0033619 |
| signal peptide processing | 0.031459105 | GO:0006465 |
| pollen germination | 0.031459105 | GO:0009846 |
| deoxyribonucleotide biosynthetic process | 0.031459105 | GO:0009263 |
| aspartic endopeptidase activity, intramembrane cleaving | 0.033687397 | GO:0042500 |
| ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor | 0.042019815 | GO:0004748 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001758 | - | - |
| CRO_T002062 | - | - |
| CRO_T002270 | AT1G01650 (2.00E-20) | ATSPPL4|SIGNAL PEPTIDE PEPTIDASE-LIKE 4 |
| CRO_T002430 | - | - |
| CRO_T002619 | - | - |
| CRO_T003352 | - | - |
| CRO_T003357 | AT5G10570 (1.00E-24) | basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
| CRO_T003440 | AT4G13850 (1.00E-17) | ATGRP2|GLYCINE-RICH RNA-BINDING PROTEIN 2; GRP2|glycine rich protein 2 |
| CRO_T004645 | - | - |
| CRO_T006422 | AT2G21790 (4.00E-60) | ATRNR1|RIBONUCLEOTIDE REDUCTASE LARGE SUBUNIT 1; CLS8|CRINKLY LEAVES 8; DPD2|defective in pollen organelle DNA degradation 2; R1|RIBONUCLEOTIDE REDUCTASE 1 |
| CRO_T008792 | - | - |
| CRO_T008818 | - | - |
| CRO_T010043 | - | - |
| CRO_T010205 | - | - |
| CRO_T010268 | - | - |
| CRO_T012858 | - | - |
| CRO_T018838 | - | - |
| CRO_T019389 | AT5G23575 (9.00E-147) | Transmembrane CLPTM1 family protein |
| CRO_T019472 | - | - |
| CRO_T019568 | - | - |
| CRO_T027513 | - | - |
| CRO_T029282 | AT1G14685 (2.00E-78) | ATBPC2|BASIC PENTACYSTEINE 2 |
| CRO_T029752 | - | - |
| CRO_T031110 | - | - |
| CRO_T033080 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000019 | Transcription_related, Transcription factor: bHLH | details |
| TissueCFM000022 | details | |
| TissueCFM000037 | deoxyribonucleotide biosynthetic process formation of glycosidic bonds, GlycosylTransferases: GTnc protein glycosylation ribonucleoside-diphosphate reductase complex ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor galactosyltransferase activity Purine metabolism carbohydrate binding | details |
| TissueCFM000055 | molybdenum cofactor biosynthesis | details |
| TissueCFM000070 | Transcription_related, Transcription factor: G2-like | details |
| TissueCFM000071 | UDP-D-apiose biosynthesis (from UDP-D-glucuronate) UDP-D-xylose biosynthesis UDP-sugars interconversion UDP-glucuronate decarboxylase activity | details |
| TissueCFM000072 | details | |
| TissueCFM000075 | methylerythritol phosphate pathway II methylerythritol phosphate pathway I Terpenoid backbone biosynthesis secologanin and strictosidine biosynthesis terpenoid biosynthetic process isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway oxidation-reduction process monoterpenoid biosynthetic process geraniol and geranial biosynthesis acetaldehyde biosynthesis I pyruvate fermentation to ethanol II Transcription_related, Transcription factor: bHLH heme binding iron ion binding (3S)-linalool biosynthesis formaldehyde oxidation II (glutathione-dependent) geranyl diphosphate biosynthesis isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process steroid hormone mediated signaling pathway geranyl diphosphate metabolic process | details |
| TissueCFM000099 | ent-kaurene biosynthesis I integral component of lumenal side of endoplasmic reticulum membrane Golgi-associated vesicle membrane integral component of cytoplasmic side of endoplasmic reticulum membrane lysosomal membrane aspartic endopeptidase activity, intramembrane cleaving Diterpenoid biosynthesis terpene synthase activity membrane protein proteolysis pollen germination signal peptide processing pollen development | details |
| TissueCFM000114 | ent-kaurene biosynthesis I Diterpenoid biosynthesis terpene synthase activity Transcription_related, Transcription factor: bHLH | details |
| TissueCFM000115 | ent-kaurene biosynthesis I multi-organism process metabolic process arginine biosynthetic process 2-Oxocarboxylic acid metabolism Diterpenoid biosynthesis root development Transcription_related, Transcription factor: bHLH terpene synthase activity N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity | details |
| TissueCFM000142 | Fatty acid metabolism regulation of biological process response to bacterium fatty acid β-oxidation II (peroxisome) unsaturated, even numbered fatty acid β-oxidation very long chain fatty acid biosynthesis II Transcription_related, Transcription factor: bHLH Transcription_related, Transcription factor: HB | details |
| TissueCFM000151 | Fatty acid metabolism | details |
| TissueCFM000159 | Cytochrome_P450, Cytochrome P450: CYP83B 4-hydroxy-tetrahydrodipicolinate synthase L-lysine biosynthesis VI salvigenin biosynthesis diaminopimelate biosynthetic process lysine biosynthetic process via diaminopimelate | details |
| TissueCFM000163 | Cytochrome_P450, Cytochrome P450: CYP81K | details |
| TissueCFM000171 | oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor Transcription_related, Transcription factor: bHLH MAPK signaling pathway - plant | details |
| TissueCFM000180 | response to manganese ion response to copper ion manganese:proton antiporter activity late endosome response to zinc ion cellular manganese ion homeostasis manganese ion transmembrane transport regulation of sequestering of zinc ion anion transmembrane transport zinc II ion transmembrane transport Transcription_related, Transcription factor: bHLH zinc ion transmembrane transporter activity | details |
| TissueCFM000194 | Transcription_related, Transcription factor: FAR1 aspartic endopeptidase activity, intramembrane cleaving manganese:proton antiporter activity integral component of lumenal side of endoplasmic reticulum membrane integral component of cytoplasmic side of endoplasmic reticulum membrane lysosomal membrane Golgi-associated vesicle membrane late endosome regulation of sequestering of zinc ion response to copper ion response to zinc ion response to far red light manganese ion transmembrane transport membrane protein proteolysis response to manganese ion cellular manganese ion homeostasis positive regulation of circadian rhythm Circadian rhythm Terpenoid backbone biosynthesis red, far-red light phototransduction signal peptide processing pollen germination | details |
| TissueCFM000207 | costunolide biosynthesis Cytochrome_P450, Cytochrome P450: CYP71B benzoate biosynthesis I (CoA-dependent, β-oxidative) Transcription_related, Transcription factor: bHLH | details |
| TissueCFM000215 | Ubiquitin_Proteasome_system, DUB: ULP Transcription_related, Transcription factor: bHLH | details |
| TissueCFM000232 | Transcription_related, Transcription factor: bHLH | details |
| TissueCFM000280 | ent-kaurene biosynthesis I Diterpenoid biosynthesis terpene synthase activity Transcription_related, Transcription factor: bHLH | details |
| TissueCFM000299 | Transcription_related, Transcription factor: bHLH | details |
| TissueCFM000328 | ajmaline and sarpagine biosynthesis Indole alkaloid biosynthesis methyl salicylate esterase activity guiding stereospecific synthesis activity dimethylallyltranstransferase activity lipase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: bHLH isoprenoid biosynthetic process phenylpropanoid biosynthetic process systemic acquired resistance, salicylic acid mediated signaling pathway regulation of catalytic activity peptidase activity | details |
| TissueCFM000389 | ribonucleoside-diphosphate reductase complex deoxyribonucleotide biosynthetic process glucan catabolic process hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor scopolin beta-glucosidase activity beta-glucosidase activity | details |
| TissueCFM000432 | response to biotic stimulus defense response benzoate biosynthesis I (CoA-dependent, β-oxidative) Transcription_related, Transcription factor: MYB-related Transcription_related, Transcription factor: bHLH | details |
| TissueCFM000454 | ent-kaurene biosynthesis I Diterpenoid biosynthesis terpene synthase activity Transcription_related, Transcription factor: bHLH | details |
| TissueCFM000521 | ent-kaurene biosynthesis I Diterpenoid biosynthesis terpene synthase activity Transcription_related, Transcription factor: bHLH | details |
| TissueCFM000576 | Transcription_related, Transcription factor: BBR-BPC | details |
| TissueCFM000670 | Transcription_related, Transcription factor: bHLH | details |
| TissueCFM000671 | Transcription_related, Transcription factor: bHLH | details |
| TissueCFM000682 | Transcription_related, Transcription factor: bHLH aspartyl esterase activity pectinesterase activity pectinesterase inhibitor activity negative regulation of catalytic activity pectin catabolic process cell wall modification Pentose and glucuronate interconversions cell wall | details |
| TissueCFM000683 | Transcription_related, Transcription factor: BBR-BPC | details |
| TissueCFM000781 | Transcription_related, Transcription factor: bHLH Transcription_related, Transcription factor: ERF | details |
| TissueCFM000835 | Transcription_related, Transcription factor: bHLH | details |
| TissueCFM000875 | Transcription_related, Transcription factor: bHLH aspartyl esterase activity pectinesterase activity pectinesterase inhibitor activity negative regulation of catalytic activity pectin catabolic process cell wall modification Pentose and glucuronate interconversions cell wall | details |
| TissueCFM000898 | manganese:proton antiporter activity response to copper ion response to manganese ion Cell cycle manganese ion transmembrane transport cellular manganese ion homeostasis mitotic sister chromatid cohesion response to zinc ion regulation of sequestering of zinc ion late endosome cohesin core heterodimer phenylpropanoid biosynthetic process Transcription_related, Transcription factor: bHLH zinc II ion transmembrane transport guiding stereospecific synthesis activity zinc ion transmembrane transporter activity chromatin binding regulation of catalytic activity DNA repair | details |
| TissueCFM000904 | Transcription_related, Transcription factor: bHLH Transcription_related, Transcription factor: MYB | details |
| TissueCFM000972 | Transcription_related, Transcription factor: bHLH | details |
| TissueCFM000977 | Cytochrome_P450, Cytochrome P450: CYP722A brassinosteroid homeostasis brassinosteroid biosynthetic process sterol metabolic process multicellular organism development Transcription_related, Transcription factor: bHLH | details |
| TissueCFM001085 | ceramide degradation Transcription_related, Transcription factor: BBR-BPC peptide-serine-N-acetyltransferase activity D-erythro-sphingosine kinase activity peptide-glutamate-N-acetyltransferase activity positive regulation of histone methylation N-terminal peptidyl-glutamic acid acetylation N-terminal peptidyl-serine acetylation internal protein amino acid acetylation NatA complex sphingolipid biosynthesis (plants) sphingolipid biosynthetic process regulation of RNA metabolic process Transcription_related, Transcription regulator: GNAT system development regulation of shoot system development cytosolic ribosome clathrin adaptor complex phospholipid-translocating ATPase activity phospholipid translocation regulation of gene expression Endocytosis plasma membrane response to stimulus single-organism cellular process protein transporter activity | details |
| TissueCFM001174 | Transcription_related, Transcription factor: bHLH Cytochrome_P450, Cytochrome P450: CYP735A trans-zeatin biosynthesis Zeatin biosynthesis anion transmembrane transport potassium ion transmembrane transport secologanin synthase activity potassium ion transmembrane transporter activity | details |
| TissueCFM001197 | Stilbenoid, diarylheptanoid and gingerol biosynthesis D-arabinono-1,4-lactone oxidase activity L-gulonolactone oxidase activity aromatic compound biosynthetic process fatty acid metabolic process Transcription_related, Transcription factor: bHLH O-methyltransferase activity S-adenosylmethionine-dependent methyltransferase activity flavin adenine dinucleotide binding | details |
| TissueCFM001250 | Aminoacyl-tRNA biosynthesis Alzheimer's disease Transcription_related, Transcription factor: BBR-BPC mitochondrial alanyl-tRNA aminoacylation isoleucyl-tRNA aminoacylation peptide catabolic process regulation of translational fidelity Cul3-RING ubiquitin ligase complex alanine-tRNA ligase activity isoleucine-tRNA ligase activity mitochondrion cytosol aminoacyl-tRNA editing activity tRNA binding tRNA modification protein processing zinc ion binding metalloendopeptidase activity amino acid binding proteolysis involved in cellular protein catabolic process | details |
| TissueCFM001326 | formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: BBR-BPC regulation of biological process folic acid-containing compound biosynthetic process | details |
| TissueCFM001510 | cellular response to stress positive regulation of kinase activity UDP-glucosylation glucan 1,4-alpha-maltotetraohydrolase activity UDP-glucose:glycoprotein glucosyltransferase activity regulation of translation formation of glycosidic bonds, GlycosylTransferases: GTnc alpha-amylase activity regulation of protein kinase activity Transcription_related, Transcription factor: BBR-BPC protein kinase regulator activity hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc protein kinase binding ribosome binding protein glycosylation Transcription_related, Transcription regulator: SNF2 RNA degradation | details |
Expression profiles
 Show details about module gene expression profiling |