TissueCFM000413's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| nuclear part | 0.008096328 | GO:0044428 |
| MAPK signaling pathway | 0.010624943 | KEGG pathway |
| Proteasome | 0.012195236 | KEGG pathway |
| membrane part | 0.034333208 | GO:0044425 |
| endomembrane system | 0.042989428 | GO:0012505 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003629 | AT5G36290 (9.00E-34) | Uncharacterized protein family (UPF0016) |
| CRO_T009696 | AT5G19990 (2.00E-30) | RPT6A|regulatory particle triple-A ATPase 6A |
| CRO_T012327 | AT1G11480 (8.00E-13) | eukaryotic translation initiation factor-related |
| CRO_T012832 | - | - |
| CRO_T020340 | AT3G07680 (2.00E-36) | p24beta2|p24 subfamily beta 2 |
| CRO_T031798 | AT2G42810 (4.00E-35) | AtPP5|protein phosphatase 5; PAPP5|Phytochrome-Associated Protein Phosphatase 5; PP5.2|protein phosphatase 5.2 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000246 | details | |
| TissueCFM000274 | photosynthesis, light reaction cellular metabolic process ATP synthesis coupled electron transport quinone binding NADH dehydrogenase (ubiquinone) activity Glycosylphosphatidylinositol(GPI)-anchor biosynthesis | details |
| TissueCFM000451 | mRNA splice site selection U1 snRNP U2-type prespliceosome mediator complex ribosome biogenesis regulation of transcription from RNA polymerase II promoter Proteasome Ribosome biogenesis in eukaryotes RNA polymerase II transcription cofactor activity mRNA binding | details |
| TissueCFM001004 | photosynthesis, light reaction ATP synthesis coupled electron transport quinone binding NADH dehydrogenase (ubiquinone) activity transport Oxidative phosphorylation chloroplast thylakoid membrane cellular metabolic process Photosynthesis intracellular part | details |
| TissueCFM001208 | ribosome biogenesis regulation of transcription from RNA polymerase II promoter mediator complex Proteasome Ribosome biogenesis in eukaryotes RNA polymerase II transcription cofactor activity nucleolus | details |
| TissueCFM001268 | ribosome biogenesis nucleolus Purine metabolism Ribosome biogenesis in eukaryotes | details |
Expression profiles
 Show details about module gene expression profiling |