TissueCFM001004's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| photosynthesis, light reaction | 3.83E-05 | GO:0019684 |
| ATP synthesis coupled electron transport | 3.83E-05 | GO:0042773 |
| quinone binding | 7.41E-05 | GO:0048038 |
| NADH dehydrogenase (ubiquinone) activity | 9.72E-05 | GO:0008137 |
| transport | 0.001342295 | GO:0006810 |
| Oxidative phosphorylation | 0.002361609 | KEGG pathway |
| chloroplast thylakoid membrane | 0.002987866 | GO:0009535 |
| cellular metabolic process | 0.011059475 | GO:0044237 |
| Photosynthesis | 0.024307736 | KEGG pathway |
| intracellular part | 0.043407503 | GO:0044424 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T006043 | - | - |
| CRO_T006925 | - | - |
| CRO_T010346 | - | - |
| CRO_T012327 | AT1G11480 (8.00E-13) | eukaryotic translation initiation factor-related |
| CRO_T015176 | ATCG00890 (8.00E-43) | NDHB.1|NADH-Ubiquinone/plastoquinone (complex I) protein |
| CRO_T027145 | ATCG00680 (2.00E-66) | PSBB|photosystem II reaction center protein B |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000205 | quinone binding Oxidative phosphorylation chloroplast integral component of membrane oxidoreductase activity photosynthesis, light reaction cytochrome complex assembly ATP synthesis coupled electron transport Photosynthesis NADH dehydrogenase (ubiquinone) activity intracellular part | details |
| TissueCFM000246 | details | |
| TissueCFM000274 | photosynthesis, light reaction cellular metabolic process ATP synthesis coupled electron transport quinone binding NADH dehydrogenase (ubiquinone) activity Glycosylphosphatidylinositol(GPI)-anchor biosynthesis | details |
| TissueCFM000413 | nuclear part MAPK signaling pathway Proteasome membrane part endomembrane system | details |
| TissueCFM000431 | Photosynthesis phosphate ion binding low-affinity nitrate transmembrane transporter activity low-affinity nitrate transport | details |
| TissueCFM000620 | Transcription_related, Transcription factor: Alfin-like Transcription_related, Transcription factor: PLATZ regulation of embryonic development glycyl-tRNA aminoacylation mitochondrial electron transport, ubiquinol to cytochrome c | details |
| TissueCFM000711 | Photosynthesis phosphate ion binding protein stabilization cellular metabolic process Transcription_related, Transcription factor: ERF photosystem II | details |
| TissueCFM000794 | ribosome biogenesis Ribosome biogenesis in eukaryotes nucleolus GTP binding GTPase activity | details |
| TissueCFM001268 | ribosome biogenesis nucleolus Purine metabolism Ribosome biogenesis in eukaryotes | details |
Expression profiles
 Show details about module gene expression profiling |