TissueCFM000439's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| lysyl-tRNA aminoacylation | 0.000709167 | GO:0006430 |
| lysine-tRNA ligase activity | 0.005909729 | GO:0004824 |
| Aminoacyl-tRNA biosynthesis | 0.011296492 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000463 | - | - |
| CRO_T004727 | - | - |
| CRO_T018503 | AT3G11710 (1.00E-46) | ATKRS-1|lysyl-tRNA synthetase 1 |
| CRO_T020222 | - | - |
| CRO_T022630 | - | - |
| CRO_T030260 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000051 | sporopollenin precursors biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc olivetol biosynthesis resveratrol biosynthesis sporopollenin biosynthetic process fatty-acyl-CoA biosynthetic process long-chain fatty acid metabolic process lysyl-tRNA aminoacylation post-translational protein modification protein N-linked glycosylation via asparagine medium-chain fatty acid-CoA ligase activity long-chain fatty acid-CoA ligase activity lysine-tRNA ligase activity dolichyl-diphosphooligosaccharide-protein glycotransferase activity mannan catabolic process vesicle docking mannan endo-1,4-beta-mannosidase activity oxidoreductase activity Fructose and mannose metabolism Phenylalanine metabolism SNARE interactions in vesicular transport Aminoacyl-tRNA biosynthesis N-Glycan biosynthesis cutin biosynthesis long-chain fatty acid activation oleate biosynthesis I (plants) stearate biosynthesis II (bacteria and plants) vesicle fusion exocytosis palmitate biosynthesis II (bacteria and plants) phosphatidylcholine acyl editing suberin monomers biosynthesis | details |
| TissueCFM000551 | estradiol 17-beta-dehydrogenase activity very long chain fatty acid biosynthesis I very long chain fatty acid biosynthesis II Fatty acid metabolism lysine-tRNA ligase activity lysyl-tRNA aminoacylation mitochondrial large ribosomal subunit Aminoacyl-tRNA biosynthesis RNA processing | details |
| TissueCFM001062 | formation of glycosidic bonds, GlycosylTransferases: GTnc methionyl-tRNA aminoacylation lysyl-tRNA aminoacylation post-translational protein modification vindoline and vinblastine biosynthesis maturation of SSU-rRNA protein N-linked glycosylation via asparagine lysine-tRNA ligase activity methionine-tRNA ligase activity Selenocompound metabolism dolichyl-diphosphooligosaccharide-protein glycotransferase activity small nucleolar ribonucleoprotein complex oligosaccharyltransferase complex Mpp10 complex tRNA binding Transcription_related, Transcription factor: ERF Aminoacyl-tRNA biosynthesis N-Glycan biosynthesis Ribosome biogenesis in eukaryotes viral nucleocapsid | details |
| TissueCFM001063 | superpathway of scopolin and esculin biosynthesis response to gibberellin regulation of lateral root development mature ribosome assembly cytokinin-activated signaling pathway lysyl-tRNA aminoacylation cell proliferation phenylpropanoids methylation (ice plant) suberin monomers biosynthesis vindoline and vinblastine biosynthesis negative regulation of abscisic acid-activated signaling pathway negative regulation of transcription, DNA-templated Transcription_related, Transcription regulator: PHD translational elongation RNA secondary structure unwinding rRNA processing root development Viral carcinogenesis | details |
| TissueCFM001090 | lysyl-tRNA aminoacylation borate transmembrane transport methionyl-tRNA aminoacylation Selenocompound metabolism lysine-tRNA ligase activity borate transmembrane transporter activity methionine-tRNA ligase activity tRNA binding Aminoacyl-tRNA biosynthesis ubiquitin-dependent protein catabolic process | details |
Expression profiles
 Show details about module gene expression profiling |