TissueCFM001063's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| superpathway of scopolin and esculin biosynthesis | 0.021650122 | plantCyc |
| response to gibberellin | 0.024863492 | GO:0009739 |
| regulation of lateral root development | 0.024863492 | GO:2000023 |
| mature ribosome assembly | 0.024863492 | GO:0042256 |
| cytokinin-activated signaling pathway | 0.024863492 | GO:0009736 |
| lysyl-tRNA aminoacylation | 0.024863492 | GO:0006430 |
| cell proliferation | 0.025318689 | GO:0008283 |
| phenylpropanoids methylation (ice plant) | 0.027426791 | plantCyc |
| suberin monomers biosynthesis | 0.027426791 | plantCyc |
| vindoline and vinblastine biosynthesis | 0.027426791 | plantCyc |
| negative regulation of abscisic acid-activated signaling pathway | 0.027611819 | GO:0009788 |
| negative regulation of transcription, DNA-templated | 0.034493363 | GO:0045892 |
| Transcription_related, Transcription regulator: PHD | 0.041478058 | TF family |
| translational elongation | 0.047038677 | GO:0006414 |
| RNA secondary structure unwinding | 0.047038677 | GO:0010501 |
| rRNA processing | 0.047038677 | GO:0006364 |
| root development | 0.047038677 | GO:0048364 |
| Viral carcinogenesis | 0.047173164 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T007026 | AT5G60990 (7.00E-86) | DEA(D/H)-box RNA helicase family protein |
| CRO_T007902 | AT2G25170 (0) | CKH2|CYTOKININ-HYPERSENSITIVE 2; EPP1|ENHANCED PHOTOMORPHOGENIC 1; GYM|GYMNOS; PKL|PICKLE; SSL2|SUPPRESSOR OF SLR 2 |
| CRO_T008772 | AT2G36690 (6.00E-46) | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
| CRO_T018503 | AT3G11710 (1.00E-46) | ATKRS-1|lysyl-tRNA synthetase 1 |
| CRO_T022151 | AT3G22980 (0) | Ribosomal protein S5/Elongation factor G/III/V family protein |
| CRO_T031068 | AT3G24750 (3.00E-12) | unknown protein |
| CRO_T031174 | AT5G51990 (6.00E-26) | CBF4|C-repeat-binding factor 4; DREB1D|DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D |
| CRO_T031219 | AT5G54160 (2.00E-106) | ATOMT1|O-methyltransferase 1; COMT1|caffeate O-methyltransferase 1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000051 | sporopollenin precursors biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc olivetol biosynthesis resveratrol biosynthesis sporopollenin biosynthetic process fatty-acyl-CoA biosynthetic process long-chain fatty acid metabolic process lysyl-tRNA aminoacylation post-translational protein modification protein N-linked glycosylation via asparagine medium-chain fatty acid-CoA ligase activity long-chain fatty acid-CoA ligase activity lysine-tRNA ligase activity dolichyl-diphosphooligosaccharide-protein glycotransferase activity mannan catabolic process vesicle docking mannan endo-1,4-beta-mannosidase activity oxidoreductase activity Fructose and mannose metabolism Phenylalanine metabolism SNARE interactions in vesicular transport Aminoacyl-tRNA biosynthesis N-Glycan biosynthesis cutin biosynthesis long-chain fatty acid activation oleate biosynthesis I (plants) stearate biosynthesis II (bacteria and plants) vesicle fusion exocytosis palmitate biosynthesis II (bacteria and plants) phosphatidylcholine acyl editing suberin monomers biosynthesis | details |
| TissueCFM000439 | lysyl-tRNA aminoacylation lysine-tRNA ligase activity Aminoacyl-tRNA biosynthesis | details |
| TissueCFM000551 | estradiol 17-beta-dehydrogenase activity very long chain fatty acid biosynthesis I very long chain fatty acid biosynthesis II Fatty acid metabolism lysine-tRNA ligase activity lysyl-tRNA aminoacylation mitochondrial large ribosomal subunit Aminoacyl-tRNA biosynthesis RNA processing | details |
| TissueCFM000652 | Pathogenic Escherichia coli infection NF-kappa B signaling pathway triacylglycerol degradation translational elongation carbohydrate transport peptidyl-tyrosine phosphorylation Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII Transcription_related, Transcription factor: ERF | details |
| TissueCFM001062 | formation of glycosidic bonds, GlycosylTransferases: GTnc methionyl-tRNA aminoacylation lysyl-tRNA aminoacylation post-translational protein modification vindoline and vinblastine biosynthesis maturation of SSU-rRNA protein N-linked glycosylation via asparagine lysine-tRNA ligase activity methionine-tRNA ligase activity Selenocompound metabolism dolichyl-diphosphooligosaccharide-protein glycotransferase activity small nucleolar ribonucleoprotein complex oligosaccharyltransferase complex Mpp10 complex tRNA binding Transcription_related, Transcription factor: ERF Aminoacyl-tRNA biosynthesis N-Glycan biosynthesis Ribosome biogenesis in eukaryotes viral nucleocapsid | details |
| TissueCFM001064 | superpathway of scopolin and esculin biosynthesis phenylpropanoids methylation (ice plant) sesaminol glucoside biosynthesis suberin monomers biosynthesis mature ribosome assembly RNA secondary structure unwinding translational elongation rRNA processing Phenylpropanoid biosynthesis Ribosome biogenesis in eukaryotes formation of glycosidic bonds, GlycosylTransferases: GTnc flavonoid glucuronidation flavonoid biosynthetic process | details |
| TissueCFM001090 | lysyl-tRNA aminoacylation borate transmembrane transport methionyl-tRNA aminoacylation Selenocompound metabolism lysine-tRNA ligase activity borate transmembrane transporter activity methionine-tRNA ligase activity tRNA binding Aminoacyl-tRNA biosynthesis ubiquitin-dependent protein catabolic process | details |
Expression profiles
 Show details about module gene expression profiling |