TissueCFM000453's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| hydroxyjasmonate sulfate biosynthesis | 0.003188803 | plantCyc |
| indole-3-acetate activation I | 0.003188803 | plantCyc |
| Hippo signaling pathway | 0.003190358 | KEGG pathway |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.009745147 | cazy family |
| Transcription_related, Transcription factor: ARF | 0.012652233 | TF family |
| Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase | 0.018767302 | kinase family |
| plant-type cell wall biogenesis | 0.041497184 | GO:0009832 |
| UDP-L-arabinose metabolic process | 0.041497184 | GO:0033356 |
| UDP-arabinopyranose mutase activity | 0.041524169 | GO:0052691 |
| Amino sugar and nucleotide sugar metabolism | 0.042527978 | KEGG pathway |
| metabolic process | 0.045157955 | GO:0008152 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T005443 | AT1G50660 (2.00E-80) | unknown protein |
| CRO_T008998 | AT4G25520 (3.00E-80) | SLK1|SEUSS-like 1 |
| CRO_T013587 | AT2G33860 (6.00E-46) | ARF3|AUXIN RESPONSE TRANSCRIPTION FACTOR 3; ETT|ETTIN |
| CRO_T016736 | AT1G51760 (8.00E-171) | IAR3|IAA-ALANINE RESISTANT 3; JR3|JASMONIC ACID RESPONSIVE 3 |
| CRO_T018622 | AT1G13380 (1.00E-45) | Protein of unknown function (DUF1218) |
| CRO_T019087 | - | - |
| CRO_T022021 | - | - |
| CRO_T023678 | AT3G02230 (0) | ATRGP1|REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1 |
| CRO_T029639 | AT4G19045 (1.00E-103) | Mob1/phocein family protein |
| CRO_T031453 | AT2G41140 (0) | CRK1|CDPK-related kinase 1 |
| CRO_T032024 | - | - |
| CRO_T032502 | AT1G29240 (6.00E-08) | Protein of unknown function (DUF688) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000188 | details | |
| TissueCFM000452 | hydroxyjasmonate sulfate biosynthesis indole-3-acetate activation I Transcription_related, Transcription factor: ARF phosphopantetheine binding ADP binding intracellular membrane-bounded organelle quercetin 3-O-glucosyltransferase activity quercetin 7-O-glucosyltransferase activity defense response fatty acid biosynthetic process flavonoid glucuronidation flavonoid biosynthetic process | details |
| TissueCFM000878 | hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Ubiquitin_Proteasome_system, DUB: USP U2-type prespliceosome U12-type spliceosomal complex U2 snRNP xyloglucan metabolic process protein deubiquitination potassium ion transmembrane transport cell wall biogenesis cytoplasmic translation spliceosomal complex assembly potassium ion transmembrane transporter activity thiol-dependent ubiquitinyl hydrolase activity xyloglucan:xyloglucosyl transferase activity mRNA binding catalytic step 2 spliceosome ubiquitin-dependent protein catabolic process | details |
| TissueCFM001079 | hydrolysis of carbohydrate esters, Carbohydrate Esterases: CE8 Base excision repair Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase calcium ion binding defense response to virus gene silencing by RNA nucleotide-excision repair oxidized purine nucleobase lesion DNA N-glycosylase activity ribonuclease P activity nucleolar ribonuclease P complex damaged DNA binding calcium-dependent phospholipid binding calcium-dependent protein serine/threonine kinase activity calmodulin-dependent protein kinase activity base-excision repair RNA phosphodiester bond hydrolysis, endonucleolytic peptidyl-serine phosphorylation protein autophosphorylation abscisic acid-activated signaling pathway | details |
| TissueCFM001080 | hydroxyjasmonate sulfate biosynthesis indole-3-acetate activation I Protein_kinases_phosphatases, PPC:1.5.2: LRK10 Like Kinase (Type 1) Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase mitochondrial pyruvate transport cell surface receptor signaling pathway peptidyl-tyrosine phosphorylation abscisic acid-activated signaling pathway response to stress peptidyl-serine phosphorylation protein autophosphorylation | details |
| TissueCFM001538 | Transcription_related, Transcription factor: WRKY formation of glycosidic bonds, GlycosylTransferases: GTnc clathrin heavy chain binding UDP-arabinopyranose mutase activity sequence-specific DNA binding clathrin coat of trans-Golgi network vesicle clathrin coat of coated pit transcription factor activity, sequence-specific DNA binding UDP-L-arabinose metabolic process plant-type cell wall biogenesis clathrin-mediated endocytosis Amino sugar and nucleotide sugar metabolism structural molecule activity ribosome binding regulation of transcription, DNA-templated cellulose biosynthetic process | details |
Expression profiles
 Show details about module gene expression profiling |