TissueCFM000529's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| lutein biosynthesis | 0.001181649 | plantCyc |
| Cytochrome_P450, Cytochrome P450: CYP97B | 0.002600434 | CYP450 family |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.003938053 | cazy family |
| Protein_kinases_phosphatases, PPC:1.1.3: Putative protein kinase/Putative receptor-like protein kinase | 0.006060153 | kinase family |
| integral component of endoplasmic reticulum membrane | 0.014290558 | GO:0030176 |
| integral component of Golgi membrane | 0.014290558 | GO:0030173 |
| holo TFIIH complex | 0.014290558 | GO:0005675 |
| Plant-pathogen interaction | 0.017829704 | KEGG pathway |
| regulation of cyclin-dependent protein serine/threonine kinase activity | 0.020046712 | GO:0000079 |
| protein maturation by iron-sulfur cluster transfer | 0.020046712 | GO:0097428 |
| 3'-phospho-5'-adenylyl sulfate transmembrane transport | 0.020046712 | GO:1902559 |
| iron-sulfur cluster assembly | 0.029863167 | GO:0016226 |
| protein phosphorylation | 0.029863167 | GO:0006468 |
| carbohydrate transport | 0.031004996 | GO:0008643 |
| ferrous iron binding | 0.031392482 | GO:0008198 |
| 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity | 0.031392482 | GO:0046964 |
| regulation of transcription from RNA polymerase II promoter | 0.041077228 | GO:0006357 |
| mitochondrial matrix | 0.041674718 | GO:0005759 |
| DNA repair | 0.048586787 | GO:0006281 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T005004 | AT3G21630 (3.00E-42) | CERK1|chitin elicitor receptor kinase 1; LYK1|LysM-containing receptor-like kinase 1; LYSM RLK1|LYSM DOMAIN RECEPTOR-LIKE KINASE 1 |
| CRO_T009516 | AT4G31850 (0) | PGR3|proton gradient regulation 3 |
| CRO_T014516 | AT5G03900 (2.00E-89) | Iron-sulphur cluster biosynthesis family protein |
| CRO_T016616 | AT1G14360 (7.00E-15) | UTR3|UDP-galactose transporter 3 |
| CRO_T018989 | AT2G18940 (0) | Tetratricopeptide repeat (TPR)-like superfamily protein |
| CRO_T020129 | AT3G53700 (8.00E-19) | MEE40|maternal effect embryo arrest 40 |
| CRO_T020249 | AT2G39190 (7.00E-98) | ATATH8|Protein kinase superfamily protein |
| CRO_T021613 | AT1G31800 (1.00E-80) | CYP97A3|cytochrome P450, family 97, subfamily A, polypeptide 3; LUT5|LUTEIN DEFICIENT 5 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000415 | protein lipoylation lipoate biosynthetic process Lipoic acid metabolism Valine, leucine and isoleucine degradation Protein_kinases_phosphatases, PPC:1.1.3: Putative protein kinase/Putative receptor-like protein kinase octanoyltransferase activity lipoate biosynthesis and incorporation I Transcription_related, Transcription factor: bHLH cutin biosynthesis long-chain fatty acid activation oleate biosynthesis I (plants) palmitate biosynthesis II (bacteria and plants) phosphatidylcholine acyl editing sporopollenin precursors biosynthesis stearate biosynthesis II (bacteria and plants) suberin monomers biosynthesis Plant-pathogen interaction MAPK signaling pathway - plant | details |
| TissueCFM001363 | Protein_kinases_phosphatases, PPC:1.1.3: Putative protein kinase/Putative receptor-like protein kinase polyamine transmembrane transport L-amino acid transmembrane transporter activity polyamine transmembrane transporter activity Plant-pathogen interaction amino acid transmembrane transport | details |
| TissueCFM001379 | 2-alkenal reductase [NAD(P)] activity fructose 1,6-bisphosphate 1-phosphatase activity lactoylglutathione lyase activity 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity (3S)-linalool biosynthesis trans, trans-farnesyl diphosphate biosynthesis geranyl diphosphate biosynthesis geranylgeranyl diphosphate biosynthesis polyisoprenoid biosynthesis superpathway of geranylgeranyl diphosphate biosynthesis II (via MEP) superpathway of geranylgeranyldiphosphate biosynthesis I (via mevalonate) 3'-phospho-5'-adenylyl sulfate transmembrane transport integral component of Golgi membrane integral component of endoplasmic reticulum membrane thylakoid lumen stromule reductive pentose-phosphate cycle Pyruvate metabolism chloroplast ribosome biogenesis isoprenoid biosynthetic process carbohydrate transport sucrose biosynthesis I (from photosynthesis) Calvin-Benson-Bassham cycle Terpenoid backbone biosynthesis gluconeogenesis I glycolysis I (from glucose 6-phosphate) metal ion binding | details |
| TissueCFM001418 | carbohydrate transport 3'-phospho-5'-adenylyl sulfate transmembrane transport Group II intron splicing photosystem I assembly mRNA cis splicing, via spliceosome integral component of Golgi membrane integral component of endoplasmic reticulum membrane 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity endonuclease activity substrate-specific transmembrane transporter activity integral component of membrane nucleic acid phosphodiester bond hydrolysis | details |
| TissueCFM001652 | Cell cycle - Caulobacter serine-type endopeptidase activity 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity endoribonuclease activity, producing 5'-phosphomonoesters 3'-phospho-5'-adenylyl sulfate transmembrane transport tRNA 3'-trailer cleavage response to reactive oxygen species proteolysis mitochondria-nucleus signaling pathway chloroplast-nucleus signaling pathway integral component of endoplasmic reticulum membrane integral component of Golgi membrane vesicle docking regulation of gene expression vesicle fusion RNA phosphodiester bond hydrolysis, endonucleolytic carbohydrate transport SNARE binding SNAP receptor activity | details |
Expression profiles
 Show details about module gene expression profiling |