TissueCFM001418's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| carbohydrate transport | 0.000281951 | GO:0008643 |
| 3'-phospho-5'-adenylyl sulfate transmembrane transport | 0.004625114 | GO:1902559 |
| Group II intron splicing | 0.004625114 | GO:0000373 |
| photosystem I assembly | 0.004625114 | GO:0048564 |
| mRNA cis splicing, via spliceosome | 0.004625114 | GO:0045292 |
| integral component of Golgi membrane | 0.010115924 | GO:0030173 |
| integral component of endoplasmic reticulum membrane | 0.010115924 | GO:0030176 |
| 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity | 0.012871389 | GO:0046964 |
| endonuclease activity | 0.026773818 | GO:0004519 |
| substrate-specific transmembrane transporter activity | 0.026773818 | GO:0022891 |
| integral component of membrane | 0.033254718 | GO:0016021 |
| nucleic acid phosphodiester bond hydrolysis | 0.038389156 | GO:0090305 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T004960 | AT5G17010 (1.00E-81) | Major facilitator superfamily protein |
| CRO_T013111 | AT1G22850 (2.00E-79) | SNARE associated Golgi protein family |
| CRO_T016616 | AT1G14360 (7.00E-15) | UTR3|UDP-galactose transporter 3 |
| CRO_T019876 | AT5G50280 (3.00E-16) | EMB1006|embryo defective 1006 |
| CRO_T020249 | AT2G39190 (7.00E-98) | ATATH8|Protein kinase superfamily protein |
| CRO_T028371 | AT3G05350 (1.00E-139) | Metallopeptidase M24 family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000529 | lutein biosynthesis Cytochrome_P450, Cytochrome P450: CYP97B formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:1.1.3: Putative protein kinase/Putative receptor-like protein kinase integral component of endoplasmic reticulum membrane integral component of Golgi membrane holo TFIIH complex Plant-pathogen interaction regulation of cyclin-dependent protein serine/threonine kinase activity protein maturation by iron-sulfur cluster transfer 3'-phospho-5'-adenylyl sulfate transmembrane transport iron-sulfur cluster assembly protein phosphorylation carbohydrate transport ferrous iron binding 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity regulation of transcription from RNA polymerase II promoter mitochondrial matrix DNA repair | details |
| TissueCFM001379 | 2-alkenal reductase [NAD(P)] activity fructose 1,6-bisphosphate 1-phosphatase activity lactoylglutathione lyase activity 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity (3S)-linalool biosynthesis trans, trans-farnesyl diphosphate biosynthesis geranyl diphosphate biosynthesis geranylgeranyl diphosphate biosynthesis polyisoprenoid biosynthesis superpathway of geranylgeranyl diphosphate biosynthesis II (via MEP) superpathway of geranylgeranyldiphosphate biosynthesis I (via mevalonate) 3'-phospho-5'-adenylyl sulfate transmembrane transport integral component of Golgi membrane integral component of endoplasmic reticulum membrane thylakoid lumen stromule reductive pentose-phosphate cycle Pyruvate metabolism chloroplast ribosome biogenesis isoprenoid biosynthetic process carbohydrate transport sucrose biosynthesis I (from photosynthesis) Calvin-Benson-Bassham cycle Terpenoid backbone biosynthesis gluconeogenesis I glycolysis I (from glucose 6-phosphate) metal ion binding | details |
| TissueCFM001406 | photosystem I assembly mRNA cis splicing, via spliceosome Group II intron splicing L-asparagine degradation I asparaginase activity superpathway of aspartate and asparagine biosynthesis actin binding endonuclease activity nucleic acid phosphodiester bond hydrolysis | details |
| TissueCFM001652 | Cell cycle - Caulobacter serine-type endopeptidase activity 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity endoribonuclease activity, producing 5'-phosphomonoesters 3'-phospho-5'-adenylyl sulfate transmembrane transport tRNA 3'-trailer cleavage response to reactive oxygen species proteolysis mitochondria-nucleus signaling pathway chloroplast-nucleus signaling pathway integral component of endoplasmic reticulum membrane integral component of Golgi membrane vesicle docking regulation of gene expression vesicle fusion RNA phosphodiester bond hydrolysis, endonucleolytic carbohydrate transport SNARE binding SNAP receptor activity | details |
Expression profiles
 Show details about module gene expression profiling |