TissueCFM000547's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Ras signaling pathway | 0.006777038 | KEGG pathway |
| regulation of calcium or calmodulin-mediated signal transduction in response to host | 0.008563761 | GO:0075177 |
| modulation by symbiont of host calcium or calmodulin-mediated signal transduction | 0.008563761 | GO:0075133 |
| detection of calcium ion | 0.008563761 | GO:0005513 |
| regulation of photomorphogenesis | 0.011235454 | GO:0010099 |
| calcium-mediated signaling | 0.011553393 | GO:0019722 |
| dihydrofolate reductase activity | 0.019271026 | GO:0004146 |
| Transcription_related, Transcription factor: RWP-RK | 0.036870922 | TF family |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000579 | - | - |
| CRO_T004831 | AT1G12775 (1.00E-51) | Pentatricopeptide repeat (PPR) superfamily protein |
| CRO_T006562 | AT4G12240 (2.00E-113) | zinc finger (C2H2 type) family protein |
| CRO_T010001 | AT1G05990 (7.00E-25) | RHS1|ROOT HAIR SPECIFIC 1 |
| CRO_T013992 | AT3G04960 (1.00E-28) | Domain of unknown function (DUF3444) |
| CRO_T018969 | AT4G12070 (1.00E-30) | unknown protein |
| CRO_T019471 | AT3G19970 (3.00E-138) | alpha/beta-Hydrolases superfamily protein |
| CRO_T023532 | AT3G50910 (5.00E-35) | unknown protein |
| CRO_T029391 | AT2G02450 (2.00E-34) | ANAC034|Arabidopsis NAC domain containing protein 34; ANAC035|NAC domain containing protein 35; LOV1|LONG VEGETATIVE PHASE 1 |
| CRO_T031516 | AT5G65400 (5.00E-61) | alpha/beta-Hydrolases superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000188 | details | |
| TissueCFM000191 | DNA binding transcription factor activity, sequence-specific DNA binding hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription factor: ARR-B Transcription_related, Transcription factor: ERF Transcription_related, Transcription factor: MYB Transcription_related, Transcription factor: Tify | details |
| TissueCFM000367 | clathrin coat of trans-Golgi network vesicle clathrin coat of coated pit clathrin-mediated endocytosis clathrin heavy chain binding structural molecule activity Transcription_related, Transcription factor: WRKY Transcription_related, Transcription regulator: PHD | details |
| TissueCFM000474 | regulation of jasmonic acid mediated signaling pathway regulation of defense response negative regulation of nucleic acid-templated transcription transcription corepressor activity response to wounding Protein_kinases_phosphatases, PPC:1.15.3: Leucine Rich Repeat Kinase IV Transcription_related, Transcription factor: Tify hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 polysaccharide binding hydrolase activity, hydrolyzing O-glycosyl compounds | details |
| TissueCFM000581 | hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Protein_kinases_phosphatases, PPC:4.4.1: Unknown Function Kinase sucrose alpha-glucosidase activity glycopeptide alpha-N-acetylgalactosaminidase activity | details |
| TissueCFM000851 | L-ascorbate degradation IV L-ascorbate degradation V ascorbate glutathione cycle modulation by symbiont of host calcium or calmodulin-mediated signal transduction regulation of calcium or calmodulin-mediated signal transduction in response to host detection of calcium ion seed maturation calcium-mediated signaling regulation of photomorphogenesis cytoplasmic microtubule organization Transcription_related, Transcription factor: C2H2 oxidation-reduction process seed germination Ascorbate and aldarate metabolism MAPK signaling pathway - yeast Ras signaling pathway L-iditol 2-dehydrogenase activity | details |
| TissueCFM001538 | Transcription_related, Transcription factor: WRKY formation of glycosidic bonds, GlycosylTransferases: GTnc clathrin heavy chain binding UDP-arabinopyranose mutase activity sequence-specific DNA binding clathrin coat of trans-Golgi network vesicle clathrin coat of coated pit transcription factor activity, sequence-specific DNA binding UDP-L-arabinose metabolic process plant-type cell wall biogenesis clathrin-mediated endocytosis Amino sugar and nucleotide sugar metabolism structural molecule activity ribosome binding regulation of transcription, DNA-templated cellulose biosynthetic process | details |
Expression profiles
 Show details about module gene expression profiling |