TissueCFM000367's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| clathrin coat of trans-Golgi network vesicle | 0.000930796 | GO:0030130 |
| clathrin coat of coated pit | 0.000930796 | GO:0030132 |
| clathrin-mediated endocytosis | 0.006894174 | GO:0072583 |
| clathrin heavy chain binding | 0.007084392 | GO:0032050 |
| structural molecule activity | 0.02122493 | GO:0005198 |
| Transcription_related, Transcription factor: WRKY | 0.027758744 | TF family |
| Transcription_related, Transcription regulator: PHD | 0.027758744 | TF family |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000579 | - | - |
| CRO_T002903 | AT3G14470 (6.00E-117) | NB-ARC domain-containing disease resistance protein |
| CRO_T005481 | AT3G05670 (7.00E-07) | RING/U-box protein |
| CRO_T007332 | AT2G23320 (5.00E-40) | WRKY15|WRKY DNA-binding protein 15 |
| CRO_T016405 | - | - |
| CRO_T031055 | - | - |
| CRO_T032105 | AT3G48890 (2.00E-66) | ATMAPR3|MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3; MSBP2|MEMBRANE STEROID BINDING PROTEIN 2 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000188 | details | |
| TissueCFM000372 | UDP-D-xylose biosynthesis RNA phosphodiester bond hydrolysis, exonucleolytic nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 3'-5'-exoribonuclease activity UDP-glucuronate decarboxylase activity CCR4-NOT complex Amino sugar and nucleotide sugar metabolism RNA degradation | details |
| TissueCFM000547 | Ras signaling pathway regulation of calcium or calmodulin-mediated signal transduction in response to host modulation by symbiont of host calcium or calmodulin-mediated signal transduction detection of calcium ion regulation of photomorphogenesis calcium-mediated signaling dihydrofolate reductase activity Transcription_related, Transcription factor: RWP-RK | details |
| TissueCFM000960 | adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Biotin metabolism Longevity regulating pathway - worm dethiobiotin synthase activity oxalate-CoA ligase activity hydrolase activity, hydrolyzing O-glycosyl compounds adenosylmethionine-8-amino-7-oxononanoate transaminase activity signaling receptor activity oxalate catabolic process positive regulation of seed germination detection of light stimulus 4-coumarate-CoA ligase activity biotin biosynthetic process seed coat development carbohydrate metabolic process cellular protein modification process protein channel activity mitochondrial inner membrane presequence translocase complex integral component of mitochondrial inner membrane cytoskeleton protein import into mitochondrial matrix Transcription_related, Transcription regulator: PHD defense response to fungus | details |
| TissueCFM001212 | homogalacturonan degradation Pentose and glucuronate interconversions Phenylpropanoid biosynthesis hydrolysis of carbohydrate esters, Carbohydrate Esterases: CE8 Transcription_related, Transcription regulator: PHD negative regulation of catalytic activity pectin catabolic process cell wall modification hydrogen peroxide catabolic process | details |
| TissueCFM001316 | spindle microtubule cytoskeleton HAUS complex detection of light stimulus signaling receptor activity cellular protein modification process spindle assembly microtubule minus-end binding Plant-pathogen interaction adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription regulator: PHD | details |
| TissueCFM001463 | Transcriptional misregulation in cancers oxalate catabolic process positive regulation of seed germination protein targeting glucose catabolic process seed coat development oxalate-CoA ligase activity 4-coumarate-CoA ligase activity defense response to fungus response to cytokinin cutin biosynthesis long-chain fatty acid activation oleate biosynthesis I (plants) palmitate biosynthesis II (bacteria and plants) phosphatidylcholine acyl editing sporopollenin precursors biosynthesis stearate biosynthesis II (bacteria and plants) suberin monomers biosynthesis protein heterodimerization activity 2-alkenal reductase [NAD(P)] activity | details |
| TissueCFM001538 | Transcription_related, Transcription factor: WRKY formation of glycosidic bonds, GlycosylTransferases: GTnc clathrin heavy chain binding UDP-arabinopyranose mutase activity sequence-specific DNA binding clathrin coat of trans-Golgi network vesicle clathrin coat of coated pit transcription factor activity, sequence-specific DNA binding UDP-L-arabinose metabolic process plant-type cell wall biogenesis clathrin-mediated endocytosis Amino sugar and nucleotide sugar metabolism structural molecule activity ribosome binding regulation of transcription, DNA-templated cellulose biosynthetic process | details |
| TissueCFM001642 | interphase microtubule nucleation by interphase microtubule organizing center centrosome duplication meiotic nuclear division response to nematode detection of light stimulus glucose catabolic process protein targeting mitotic spindle assembly growth cortical microtubule organization microtubule minus-end binding signaling receptor activity gamma-tubulin binding intracellular transport cellular protein modification process Transcriptional misregulation in cancers Lysosome equatorial microtubule organizing center gamma-tubulin complex structural constituent of cytoskeleton membrane coat nucleosome protein heterodimerization activity protein transport | details |
Expression profiles
 Show details about module gene expression profiling |