TissueCFM000560's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| exosome (RNase complex) | 0.002127408 | GO:0000178 |
| snRNA 3'-end processing | 0.00342672 | GO:0034472 |
| rRNA metabolic process | 0.00342672 | GO:0016072 |
| nuclear polyadenylation-dependent ncRNA catabolic process | 0.00342672 | GO:0071046 |
| nuclear-transcribed mRNA catabolic process, exonucleolytic | 0.005138484 | GO:0000291 |
| regulation of meristem structural organization | 0.005138484 | GO:0009934 |
| carpel development | 0.005993658 | GO:0048440 |
| RNA degradation | 0.01736409 | KEGG pathway |
| Transcription_related, Transcription factor: HB | 0.017596921 | TF family |
| sequence-specific DNA binding | 0.041549416 | GO:0043565 |
| nucleic acid phosphodiester bond hydrolysis | 0.043794389 | GO:0090305 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000687 | AT1G23380 (2.00E-60) | KNAT6|KNOTTED1-like homeobox gene 6 |
| CRO_T002507 | AT1G24160 (4.00E-17) | unknown protein |
| CRO_T004103 | AT3G07750 (5.00E-39) | 3'-5'-exoribonuclease family protein |
| CRO_T008278 | - | - |
| CRO_T020438 | - | - |
| CRO_T021222 | - | - |
| CRO_T021224 | - | - |
| CRO_T030155 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000103 | details | |
| TissueCFM000137 | aldehyde oxidase activity hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc redox enzymes that act in conjunction with CAZymes, Auxiliary Activities: AA7 carpel development regulation of meristem structural organization glycopeptide alpha-N-acetylgalactosaminidase activity sucrose alpha-glucosidase activity enzyme inhibitor activity glucan endo-1,3-beta-D-glucosidase activity adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Transcription_related, Transcription factor: HB polysaccharide binding | details |
| TissueCFM000143 | adenine and adenosine salvage II | details |
| TissueCFM000167 | details | |
| TissueCFM000191 | DNA binding transcription factor activity, sequence-specific DNA binding hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription factor: ARR-B Transcription_related, Transcription factor: ERF Transcription_related, Transcription factor: MYB Transcription_related, Transcription factor: Tify | details |
| TissueCFM000204 | Amino sugar and nucleotide sugar metabolism glucose import glucose transmembrane transport proton transport glucose transmembrane transporter activity sugar:proton symporter activity | details |
| TissueCFM000526 | guanosine nucleotides degradation I guanosine nucleotides degradation II pyrimidine salvage pathway 5'-nucleotidase activity adenosine nucleotides degradation I Protein export Pyrimidine metabolism | details |
| TissueCFM000527 | Diterpenoid biosynthesis gibberellin 3-beta-dioxygenase activity gibberellin 20-oxidase activity ent-kaurene biosynthesis I gibberellin biosynthesis I (non C-3, non C-13 hydroxylation) gibberellin biosynthesis III (early C-13 hydroxylation) regulation of meristem structural organization carpel development gibberellin biosynthetic process gibberellic acid mediated signaling pathway glucan endo-1,3-beta-D-glucosidase activity adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription factor: HB cellular transition metal ion homeostasis response to light stimulus flower development unidimensional cell growth metal ion transport transition metal ion binding helicase activity polysaccharide binding | details |
| TissueCFM000762 | membrane coat plant-type vacuole membrane structural molecule activity | details |
| TissueCFM000987 | membrane coat structural molecule activity Transcription_related, Transcription factor: BES1 regulation of cellular process vesicle-mediated transport intracellular protein transport cellular process | details |
Expression profiles
 Show details about module gene expression profiling |