TissueCFM000633's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Peroxisome | 0.006014577 | KEGG pathway |
| aging | 0.011565349 | GO:0007568 |
| shoot system development | 0.012843743 | GO:0048367 |
| reproductive structure development | 0.012843743 | GO:0048608 |
| single organism reproductive process | 0.01540566 | GO:0044702 |
| Transcription_related, Transcription factor: NAC | 0.039155773 | TF family |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T005185 | AT1G24480 (4.00E-24) | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
| CRO_T008987 | AT2G25690 (1.00E-18) | Protein of unknown function (DUF581) |
| CRO_T016002 | AT1G69490 (7.00E-89) | ANAC029|Arabidopsis NAC domain containing protein 29; ATNAP|NAC-LIKE, ACTIVATED BY AP3/PI |
| CRO_T016439 | - | - |
| CRO_T026180 | AT1G25380 (1.00E-25) | ATNDT2|NAD+ TRANSPORTER 2 |
| CRO_T026706 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000436 | potassium channel activity pyrimidine ribonucleosides salvage I 3-phosphoinositide biosynthesis Autophagy - animal cell wall organization or biogenesis regulation of cellular process potassium ion transmembrane transport response to abscisic acid O-acetyltransferase activity Purine metabolism | details |
| TissueCFM000484 | Folate biosynthesis argininosuccinate metabolic process response to temperature stimulus cytosolic proteasome complex proteasome regulatory particle, base subcomplex nuclear proteasome complex Mo-molybdopterin cofactor biosynthetic process positive regulation of RNA polymerase II transcriptional preinitiation complex assembly urea cycle L-arginine biosynthesis I (via L-ornithine) aldehyde-lyase activity argininosuccinate synthase activity Mo-molybdopterin cofactor sulfurase activity ER-associated ubiquitin-dependent protein catabolic process response to osmotic stress arginine biosynthetic process isoleucine-tRNA ligase activity phosphogluconate dehydrogenase (decarboxylating) activity molybdenum ion binding L-arginine biosynthesis II (acetyl cycle) proteasome-activating ATPase activity TBP-class protein binding Biosynthesis of amino acids Calvin-Benson-Bassham cycle gluconeogenesis I glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) sucrose biosynthesis I (from photosynthesis) Transcription_related, Transcription factor: WRKY | details |
| TissueCFM000588 | Biosynthesis of amino acids Protein_kinases_phosphatases, PPC:5.1.2: Other Kinase argininosuccinate synthase activity histidinol dehydrogenase activity L-arginine biosynthesis I (via L-ornithine) L-arginine biosynthesis II (acetyl cycle) L-histidine biosynthesis urea cycle xyloglucan biosynthesis argininosuccinate metabolic process aging histidine biosynthetic process shoot system development reproductive structure development D-myo-inositol (1,4,5)-trisphosphate biosynthesis arginine biosynthetic process single organism reproductive process 3-phosphoinositide biosynthesis | details |
| TissueCFM000709 | Cytochrome_P450, Cytochrome P450: CYP90D Autophagy - animal Brassinosteroid biosynthesis potassium channel activity hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc brassinosteroid biosynthesis I brassinosteroid biosynthesis II 3-phosphoinositide biosynthesis potassium ion transmembrane transport xyloglucan metabolic process sterol metabolic process cell wall biogenesis brassinosteroid biosynthetic process brassinosteroid homeostasis multicellular organism development regulation of cellular process xyloglucan:xyloglucosyl transferase activity | details |
| TissueCFM000791 | Ubiquitin_Proteasome_system, E3: RING argininosuccinate metabolic process urea cycle L-arginine biosynthesis I (via L-ornithine) argininosuccinate synthase activity L-arginine biosynthesis II (acetyl cycle) arginine biosynthetic process Biosynthesis of amino acids | details |
| TissueCFM000817 | L-arginine biosynthesis I (via L-ornithine) urea cycle L-arginine biosynthesis II (acetyl cycle) argininosuccinate metabolic process aging argininosuccinate synthase activity shoot system development reproductive structure development positive regulation of RNA polymerase II transcriptional preinitiation complex assembly ER-associated ubiquitin-dependent protein catabolic process arginine biosynthetic process single organism reproductive process regulation of transcription, DNA-templated proteasome regulatory particle, base subcomplex nuclear proteasome complex cytosolic proteasome complex Protein_kinases_phosphatases, PPC:1.14.2: Receptor Like Cytoplasmic Kinase IX Protein_kinases_phosphatases, PPC:4.4.1: Unknown Function Kinase TBP-class protein binding proteasome-activating ATPase activity Biosynthesis of amino acids DNA binding Transcription_related, Transcription factor: WRKY Transcription_related, Transcription factor: NAC | details |
| TissueCFM000917 | argininosuccinate metabolic process coenzyme A transmembrane transport urea cycle L-arginine biosynthesis I (via L-ornithine) argininosuccinate synthase activity coenzyme A transmembrane transporter activity L-arginine biosynthesis II (acetyl cycle) D-myo-inositol (1,4,5)-trisphosphate biosynthesis arginine biosynthetic process 3-phosphoinositide biosynthesis Transcription_related, Transcription factor: Trihelix Biosynthesis of amino acids flavonoid glucuronidation flavonoid biosynthetic process | details |
Expression profiles
 Show details about module gene expression profiling |