TissueCFM000709's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Cytochrome_P450, Cytochrome P450: CYP90D | 0.001063908 | CYP450 family |
| Autophagy - animal | 0.005312472 | KEGG pathway |
| Brassinosteroid biosynthesis | 0.005312472 | KEGG pathway |
| potassium channel activity | 0.007819149 | GO:0005267 |
| hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc | 0.008492422 | cazy family |
| brassinosteroid biosynthesis I | 0.009739531 | plantCyc |
| brassinosteroid biosynthesis II | 0.009739531 | plantCyc |
| 3-phosphoinositide biosynthesis | 0.011673629 | plantCyc |
| potassium ion transmembrane transport | 0.02936084 | GO:0071805 |
| xyloglucan metabolic process | 0.02936084 | GO:0010411 |
| sterol metabolic process | 0.02936084 | GO:0016125 |
| cell wall biogenesis | 0.02936084 | GO:0042546 |
| brassinosteroid biosynthetic process | 0.02936084 | GO:0016132 |
| brassinosteroid homeostasis | 0.02936084 | GO:0010268 |
| multicellular organism development | 0.038785365 | GO:0007275 |
| regulation of cellular process | 0.038785365 | GO:0050794 |
| xyloglucan:xyloglucosyl transferase activity | 0.040315443 | GO:0016762 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001016 | AT2G32760 (8.00E-24) | unknown protein |
| CRO_T004035 | AT4G13090 (9.00E-58) | XTH2|xyloglucan endotransglucosylase/hydrolase 2 |
| CRO_T008987 | AT2G25690 (1.00E-18) | Protein of unknown function (DUF581) |
| CRO_T010845 | AT3G29180 (5.00E-116) | Protein of unknown function (DUF1336) |
| CRO_T014527 | AT2G29090 (5.00E-52) | CYP707A2|cytochrome P450, family 707, subfamily A, polypeptide 2 |
| CRO_T019502 | AT4G18160 (1.00E-54) | ATKCO6|CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 6 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000436 | potassium channel activity pyrimidine ribonucleosides salvage I 3-phosphoinositide biosynthesis Autophagy - animal cell wall organization or biogenesis regulation of cellular process potassium ion transmembrane transport response to abscisic acid O-acetyltransferase activity Purine metabolism | details |
| TissueCFM000633 | Peroxisome aging shoot system development reproductive structure development single organism reproductive process Transcription_related, Transcription factor: NAC | details |
| TissueCFM000791 | Ubiquitin_Proteasome_system, E3: RING argininosuccinate metabolic process urea cycle L-arginine biosynthesis I (via L-ornithine) argininosuccinate synthase activity L-arginine biosynthesis II (acetyl cycle) arginine biosynthetic process Biosynthesis of amino acids | details |
| TissueCFM000917 | argininosuccinate metabolic process coenzyme A transmembrane transport urea cycle L-arginine biosynthesis I (via L-ornithine) argininosuccinate synthase activity coenzyme A transmembrane transporter activity L-arginine biosynthesis II (acetyl cycle) D-myo-inositol (1,4,5)-trisphosphate biosynthesis arginine biosynthetic process 3-phosphoinositide biosynthesis Transcription_related, Transcription factor: Trihelix Biosynthesis of amino acids flavonoid glucuronidation flavonoid biosynthetic process | details |
| TissueCFM001244 | regulation of fatty acid biosynthetic process barrier septum site selection regulation of phosphorylation regulation of nitrogen utilization calcium-dependent ATPase activity acetylglutamate kinase regulator activity anthocyanin-containing compound biosynthetic process chloroplast fission hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription factor: C3H cell wall biogenesis xyloglucan metabolic process regulation of catalytic activity xyloglucan:xyloglucosyl transferase activity | details |
| TissueCFM001759 | regulation of nucleobase-containing compound metabolic process positive regulation of chromatin organization xylogalacturonan biosynthesis regulation of macromolecule metabolic process hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc non-hydrolytic cleavage of glycosidic bonds, Polysaccharide Lyases: PL4 xyloglucan metabolic process cell wall biogenesis pectin catabolic process single-organism cellular process pectate lyase activity xyloglucan:xyloglucosyl transferase activity Pentose and glucuronate interconversions Purine metabolism | details |
Expression profiles
 Show details about module gene expression profiling |