TissueCFM000679's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| cytokinins degradation | 0.002657217 | plantCyc |
| Zeatin biosynthesis | 0.007249122 | KEGG pathway |
| cytokinin metabolic process | 0.008772705 | GO:0009690 |
| cytokinin dehydrogenase activity | 0.010339733 | GO:0019139 |
| Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII | 0.017079564 | kinase family |
| oxidoreductase activity, acting on CH-OH group of donors | 0.028735521 | GO:0016614 |
| flavin adenine dinucleotide binding | 0.046957595 | GO:0050660 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T006061 | AT1G75800 (3.00E-46) | Pathogenesis-related thaumatin superfamily protein |
| CRO_T018110 | AT2G02870 (2.00E-168) | Galactose oxidase/kelch repeat superfamily protein |
| CRO_T019127 | AT1G75450 (3.00E-37) | ATCKX5|CYTOKININ OXIDASE 5; ATCKX6|CYTOKININ OXIDASE 6 |
| CRO_T020303 | AT5G19900 (4.00E-75) | PRLI-interacting factor, putative |
| CRO_T020919 | AT3G47580 (6.00E-161) | Leucine-rich repeat protein kinase family protein |
| CRO_T022934 | AT1G75800 (2.00E-57) | Pathogenesis-related thaumatin superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000622 | L-histidine biosynthesis histidinol dehydrogenase activity regulation of shoot system development histidine biosynthetic process seed maturation regulation of seed germination Transcription_related, Transcription factor: Trihelix Biosynthesis of amino acids formation of glycosidic bonds, GlycosylTransferases: GTnc serine-type peptidase activity transcription regulatory region DNA binding pollen development | details |
| TissueCFM000638 | formation of glycosidic bonds, GlycosylTransferases: GTnc histidinol dehydrogenase activity beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity cytokinin-O-glucosides biosynthesis L-histidine biosynthesis protein N-linked glycosylation histidine biosynthetic process transferase activity, transferring hexosyl groups N-Glycan biosynthesis Zeatin biosynthesis pollen development Biosynthesis of amino acids NAD binding | details |
| TissueCFM000680 | cytokinin dehydrogenase activity cytokinin metabolic process Zeatin biosynthesis oxidoreductase activity, acting on CH-OH group of donors flavin adenine dinucleotide binding histidinol dehydrogenase activity cytokinins degradation L-histidine biosynthesis histidine biosynthetic process oxidation-reduction process Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII pollen development Biosynthesis of amino acids NAD binding | details |
| TissueCFM000881 | cytokinin dehydrogenase activity cytokinin metabolic process Zeatin biosynthesis oxidoreductase activity, acting on CH-OH group of donors flavin adenine dinucleotide binding diaminopimelate decarboxylase activity cytokinins degradation L-lysine biosynthesis VI lysine biosynthetic process via diaminopimelate Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII Biosynthesis of amino acids | details |
| TissueCFM000882 | single-organism transport formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII | details |
| TissueCFM000992 | cytokinin metabolic process cytokinin dehydrogenase activity Zeatin biosynthesis oxidoreductase activity, acting on CH-OH group of donors ruffle membrane flavin adenine dinucleotide binding diaminopimelate decarboxylase activity regulation of ruffle assembly cytokinins degradation L-lysine biosynthesis VI lysine biosynthetic process via diaminopimelate phosphatidylinositol binding metal ion binding Biosynthesis of amino acids oxidation-reduction process | details |
| TissueCFM000993 | cytokinin metabolic process cytokinin dehydrogenase activity Zeatin biosynthesis oxidoreductase activity, acting on CH-OH group of donors flavin adenine dinucleotide binding histidinol dehydrogenase activity oxidation-reduction process cytokinins degradation L-histidine biosynthesis histidine biosynthetic process pollen development Biosynthesis of amino acids NAD binding chloroplast stroma | details |
| TissueCFM001744 | L-lysine biosynthesis VI lysine biosynthetic process via diaminopimelate Biosynthesis of amino acids L,L-diaminopimelate aminotransferase activity RNA lariat debranching enzyme activity diaminopimelate decarboxylase activity Transcription_related, Transcription regulator: IWS1 Transcription_related, Transcription factor: Trihelix systemic acquired resistance, salicylic acid mediated signaling pathway RNA phosphodiester bond hydrolysis, endonucleolytic response to cytokinin mRNA splicing, via spliceosome | details |
| TissueCFM001761 | L-lysine biosynthesis VI Protein_kinases_phosphatases, PPC:4.5.1: MAPK Family Transcription_related, Transcription factor: Trihelix regulation of shoot system development systemic acquired resistance, salicylic acid mediated signaling pathway seed maturation lysine biosynthetic process via diaminopimelate regulation of seed germination L,L-diaminopimelate aminotransferase activity response to cytokinin transcription regulatory region DNA binding embryo development ending in seed dormancy Biosynthesis of amino acids | details |
Expression profiles
 Show details about module gene expression profiling |