TissueCFM000622's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| L-histidine biosynthesis | 0.003069746 | plantCyc |
| histidinol dehydrogenase activity | 0.010280159 | GO:0004399 |
| regulation of shoot system development | 0.015035034 | GO:0048831 |
| histidine biosynthetic process | 0.015035034 | GO:0000105 |
| seed maturation | 0.015035034 | GO:0010431 |
| regulation of seed germination | 0.015035034 | GO:0010029 |
| Transcription_related, Transcription factor: Trihelix | 0.019804535 | TF family |
| Biosynthesis of amino acids | 0.022011556 | KEGG pathway |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.026046135 | cazy family |
| serine-type peptidase activity | 0.029081961 | GO:0008236 |
| transcription regulatory region DNA binding | 0.029081961 | GO:0044212 |
| pollen development | 0.049157078 | GO:0009555 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T005344 | AT1G66900 (1.00E-84) | alpha/beta-Hydrolases superfamily protein |
| CRO_T009033 | AT1G54060 (3.00E-09) | ASIL1|6B-interacting protein 1-like 1 |
| CRO_T011944 | AT5G63890 (0) | ATHDH|histidinol dehydrogenase; HISN8|HISTIDINE BIOSYNTHESIS 8 |
| CRO_T015306 | AT4G00720 (2.00E-31) | ASKTHETA|SHAGGY-LIKE PROTEIN KINASE THETA; ATSK32|shaggy-like protein kinase 32 |
| CRO_T022934 | AT1G75800 (2.00E-57) | Pathogenesis-related thaumatin superfamily protein |
| CRO_T031619 | AT2G37980 (0) | O-fucosyltransferase family protein |
| CRO_T031993 | AT1G02380 (1.00E-07) | unknown protein |
| CRO_T031994 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000065 | iron reduction and absorption L-histidine biosynthesis histidinol dehydrogenase activity manganese:proton antiporter activity | details |
| TissueCFM000121 | Biosynthesis of amino acids ornithine carbamoyltransferase activity histidinol dehydrogenase activity L-citrulline degradation L-arginine biosynthesis I (via L-ornithine) L-arginine biosynthesis II (acetyl cycle) L-histidine biosynthesis ornithine-citrulline shuttle urea cycle organic acid transmembrane transporter activity | details |
| TissueCFM000144 | L-histidine biosynthesis histidinol dehydrogenase activity 7-methylguanosine RNA capping histidine biosynthetic process RNA methylation | details |
| TissueCFM000175 | Biosynthesis of amino acids | details |
| TissueCFM000197 | NAD binding histidinol dehydrogenase activity | details |
| TissueCFM000344 | Biosynthesis of amino acids Alanine, aspartate and glutamate metabolism L-arginine biosynthesis I (via L-ornithine) L-asparagine biosynthesis I L-asparagine biosynthesis II superpathway of L-asparagine biosynthesis urea cycle tau-protein kinase activity histidinol dehydrogenase activity phosphoric diester hydrolase activity argininosuccinate synthase activity Protein_kinases_phosphatases, PPC:4.5.4: GSK3/Shaggy Like Protein Kinase Family L-arginine biosynthesis II (acetyl cycle) L-glutamine degradation I L-histidine biosynthesis superpathway of aspartate and asparagine biosynthesis argininosuccinate metabolic process response to absence of light asparagine synthase (glutamine-hydrolyzing) activity asparagine biosynthetic process histidine biosynthetic process arginine biosynthetic process glutamine metabolic process protein phosphorylation ATP binding pollen development | details |
| TissueCFM000588 | Biosynthesis of amino acids Protein_kinases_phosphatases, PPC:5.1.2: Other Kinase argininosuccinate synthase activity histidinol dehydrogenase activity L-arginine biosynthesis I (via L-ornithine) L-arginine biosynthesis II (acetyl cycle) L-histidine biosynthesis urea cycle xyloglucan biosynthesis argininosuccinate metabolic process aging histidine biosynthetic process shoot system development reproductive structure development D-myo-inositol (1,4,5)-trisphosphate biosynthesis arginine biosynthetic process single organism reproductive process 3-phosphoinositide biosynthesis | details |
| TissueCFM000638 | formation of glycosidic bonds, GlycosylTransferases: GTnc histidinol dehydrogenase activity beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity cytokinin-O-glucosides biosynthesis L-histidine biosynthesis protein N-linked glycosylation histidine biosynthetic process transferase activity, transferring hexosyl groups N-Glycan biosynthesis Zeatin biosynthesis pollen development Biosynthesis of amino acids NAD binding | details |
| TissueCFM000679 | cytokinins degradation Zeatin biosynthesis cytokinin metabolic process cytokinin dehydrogenase activity Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII oxidoreductase activity, acting on CH-OH group of donors flavin adenine dinucleotide binding | details |
| TissueCFM000680 | cytokinin dehydrogenase activity cytokinin metabolic process Zeatin biosynthesis oxidoreductase activity, acting on CH-OH group of donors flavin adenine dinucleotide binding histidinol dehydrogenase activity cytokinins degradation L-histidine biosynthesis histidine biosynthetic process oxidation-reduction process Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII pollen development Biosynthesis of amino acids NAD binding | details |
| TissueCFM000882 | single-organism transport formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII | details |
| TissueCFM000910 | formation of glycosidic bonds, GlycosylTransferases: GTnc beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity argininosuccinate synthase activity argininosuccinate metabolic process urea cycle serine-type peptidase activity protein N-linked glycosylation arginine biosynthetic process Biosynthesis of amino acids N-Glycan biosynthesis | details |
| TissueCFM000956 | histidinol dehydrogenase activity L-histidine biosynthesis histidine biosynthetic process Biosynthesis of amino acids pollen development NAD binding | details |
| TissueCFM000993 | cytokinin metabolic process cytokinin dehydrogenase activity Zeatin biosynthesis oxidoreductase activity, acting on CH-OH group of donors flavin adenine dinucleotide binding histidinol dehydrogenase activity oxidation-reduction process cytokinins degradation L-histidine biosynthesis histidine biosynthetic process pollen development Biosynthesis of amino acids NAD binding chloroplast stroma | details |
| TissueCFM000996 | L-histidine biosynthesis histidinol dehydrogenase activity Biosynthesis of amino acids Protein_kinases_phosphatases, PPC:1.5.1: Wall Associated Kinase-like Kinase cell surface receptor signaling pathway histidine biosynthetic process pollen development | details |
| TissueCFM001098 | seed maturation regulation of shoot system development regulation of seed germination Transcription_related, Transcription factor: Trihelix Transcription_related, Transcription factor: MYB transcription regulatory region DNA binding embryo development ending in seed dormancy | details |
| TissueCFM001555 | ruffle membrane regulation of ruffle assembly amino acid import regulation of seed germination regulation of shoot system development seed maturation sequence-specific DNA binding Transcription_related, Transcription factor: Trihelix Transcription_related, Transcription factor: WRKY transcription regulatory region DNA binding phosphatidylinositol binding amino acid transmembrane transporter activity amino acid transmembrane transport | details |
| TissueCFM001761 | L-lysine biosynthesis VI Protein_kinases_phosphatases, PPC:4.5.1: MAPK Family Transcription_related, Transcription factor: Trihelix regulation of shoot system development systemic acquired resistance, salicylic acid mediated signaling pathway seed maturation lysine biosynthetic process via diaminopimelate regulation of seed germination L,L-diaminopimelate aminotransferase activity response to cytokinin transcription regulatory region DNA binding embryo development ending in seed dormancy Biosynthesis of amino acids | details |
Expression profiles
 Show details about module gene expression profiling |