TissueCFM000744's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| ethylene biosynthesis I (plants) | 0.003718455 | plantCyc |
| ethylene biosynthetic process | 0.005849767 | GO:0009693 |
| Cysteine and methionine metabolism | 0.012195236 | KEGG pathway |
| NF-kappa B signaling pathway | 0.012195236 | KEGG pathway |
| 1-aminocyclopropane-1-carboxylate oxidase activity | 0.013029989 | GO:0009815 |
| peptidyl-tyrosine phosphorylation | 0.020904439 | GO:0018108 |
| Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII | 0.038900601 | kinase family |
| non-membrane spanning protein tyrosine kinase activity | 0.039017827 | GO:0004715 |
| Transcription_related, Transcription factor: ERF | 0.045526243 | TF family |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003731 | AT1G18520 (4.00E-40) | TET11|tetraspanin11 |
| CRO_T018078 | AT5G19790 (5.00E-14) | RAP2.11|related to AP2 11 |
| CRO_T018176 | AT4G10490 (1.00E-49) | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
| CRO_T018629 | AT1G53645 (3.00E-70) | hydroxyproline-rich glycoprotein family protein |
| CRO_T024941 | AT1G61590 (0) | Protein kinase superfamily protein |
| CRO_T028575 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000259 | L-cysteine catabolic process to pyruvate Piccolo NuA4 histone acetyltransferase complex L-cysteine desulfhydrase activity Protein_kinases_phosphatases, PPC:1.17.1: Wall Associated Kinase cell surface receptor signaling pathway Spliceosome regulation of transcription from RNA polymerase II promoter | details |
| TissueCFM000652 | Pathogenic Escherichia coli infection NF-kappa B signaling pathway triacylglycerol degradation translational elongation carbohydrate transport peptidyl-tyrosine phosphorylation Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII Transcription_related, Transcription factor: ERF | details |
| TissueCFM000703 | Cytochrome_P450, Cytochrome P450: CYP718A hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc (+)-abscisic acid 8'-hydroxylase activity Transcription_related, Transcription factor: Orphans protein kinase binding phosphorelay signal transduction system regulation of cyclin-dependent protein serine/threonine kinase activity brassinosteroid homeostasis sterol metabolic process brassinosteroid biosynthetic process Plant hormone signal transduction multicellular organism development | details |
| TissueCFM001402 | regulation of cell adhesion cullin deneddylation SCF-dependent proteasomal ubiquitin-dependent protein catabolic process SCF ubiquitin ligase complex proteasome complex | details |
| TissueCFM001460 | megagametogenesis Photosynthesis | details |
Expression profiles
 Show details about module gene expression profiling |