TissueCFM001402's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| regulation of cell adhesion | 0.004432624 | GO:0030155 |
| cullin deneddylation | 0.005907982 | GO:0010388 |
| SCF-dependent proteasomal ubiquitin-dependent protein catabolic process | 0.00639795 | GO:0031146 |
| SCF ubiquitin ligase complex | 0.008280437 | GO:0019005 |
| proteasome complex | 0.008280437 | GO:0000502 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002552 | AT3G12940 (0) | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
| CRO_T013120 | AT1G27340 (4.00E-14) | LCR|LEAF CURLING RESPONSIVENESS |
| CRO_T018629 | AT1G53645 (3.00E-70) | hydroxyproline-rich glycoprotein family protein |
| CRO_T023956 | AT2G26990 (0) | COP12|CONSTITUTIVE PHOTOMORPHOGENIC 12; FUS12|FUSCA 12 |
| CRO_T024618 | AT5G01160 (1.00E-38) | RING/U-box superfamily protein |
| CRO_T031780 | AT3G07570 (6.00E-104) | Cytochrome b561/ferric reductase transmembrane with DOMON related domain |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000259 | L-cysteine catabolic process to pyruvate Piccolo NuA4 histone acetyltransferase complex L-cysteine desulfhydrase activity Protein_kinases_phosphatases, PPC:1.17.1: Wall Associated Kinase cell surface receptor signaling pathway Spliceosome regulation of transcription from RNA polymerase II promoter | details |
| TissueCFM000382 | O-acetyltransferase activity cell wall organization or biogenesis amidophosphoribosyltransferase activity purine nucleobase biosynthetic process peptide metabolic process Golgi apparatus 5-aminoimidazole ribonucleotide biosynthesis I Protein_kinases_phosphatases, PPC:1.6.3: Receptor Like Cytoplasmic Kinase V nucleoside metabolic process Transcription_related, Transcription factor: C2C2-Dof integral component of membrane hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc ajmaline and sarpagine biosynthesis benzoate biosynthesis I (CoA-dependent, β-oxidative) homogalacturonan degradation NF-kappa B signaling pathway | details |
| TissueCFM000703 | Cytochrome_P450, Cytochrome P450: CYP718A hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc (+)-abscisic acid 8'-hydroxylase activity Transcription_related, Transcription factor: Orphans protein kinase binding phosphorelay signal transduction system regulation of cyclin-dependent protein serine/threonine kinase activity brassinosteroid homeostasis sterol metabolic process brassinosteroid biosynthetic process Plant hormone signal transduction multicellular organism development | details |
| TissueCFM000744 | ethylene biosynthesis I (plants) ethylene biosynthetic process Cysteine and methionine metabolism NF-kappa B signaling pathway 1-aminocyclopropane-1-carboxylate oxidase activity peptidyl-tyrosine phosphorylation Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII non-membrane spanning protein tyrosine kinase activity Transcription_related, Transcription factor: ERF | details |
| TissueCFM000763 | Protein_kinases_phosphatases, PPC:1.6.3: Receptor Like Cytoplasmic Kinase V cullin deneddylation peptide metabolic process NF-kappa B signaling pathway proteasome complex | details |
| TissueCFM000846 | hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc pyridoxamine-phosphate oxidase activity pyridoxal phosphate biosynthetic process SCF-dependent proteasomal ubiquitin-dependent protein catabolic process SCF ubiquitin ligase complex nucleoplasm calcium-dependent phospholipid binding RNA transport FMN binding response to stimulus | details |
| TissueCFM001169 | 5-aminoimidazole ribonucleotide biosynthesis I Protein_kinases_phosphatases, PPC:1.6.3: Receptor Like Cytoplasmic Kinase V purine nucleobase biosynthetic process peptide metabolic process phosphorylation nucleoside metabolic process regulation of cyclin-dependent protein serine/threonine kinase activity amidophosphoribosyltransferase activity cell wall organization or biogenesis NF-kappa B signaling pathway protein kinase binding Purine metabolism O-acetyltransferase activity metalloendopeptidase activity | details |
| TissueCFM001299 | Purine metabolism amidophosphoribosyltransferase activity Thyroid hormone signaling pathway 5-aminoimidazole ribonucleotide biosynthesis I purine nucleobase biosynthetic process Transcription_related, Transcription factor: Orphans pyrimidine deoxyribonucleotides de novo biosynthesis I nucleoside metabolic process pyrimidine ribonucleotides interconversion cell wall organization or biogenesis phosphorelay signal transduction system O-acetyltransferase activity | details |
| TissueCFM001317 | cullin deneddylation protein deacetylation protein ADP-ribosylation Golgi vesicle transport NAD-dependent protein deacetylase activity NAD+ binding regulation of flower development vesicle docking protein glycosylation vesicle fusion formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: B3 Transcription_related, Transcription factor: MYB galactosyltransferase activity SNAP receptor activity SNARE binding SNARE complex proteasome complex mitochondrial matrix | details |
| TissueCFM001318 | Protein_kinases_phosphatases, PPC:1.16.1: Receptor Like Cytoplasmic Kinase II Transcription_related, Transcription factor: BES1 formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: B3 cullin deneddylation Golgi vesicle transport brassinosteroid mediated signaling pathway vesicle docking vesicle fusion protein glycosylation Plant hormone signal transduction SNARE binding galactosyltransferase activity SNAP receptor activity proteasome complex | details |
| TissueCFM001403 | Ras signaling pathway regulation of root development endoplasmic reticulum unfolded protein response defense response to fungus, incompatible interaction fruit development response to extracellular stimulus reactive oxygen species metabolic process lateral root development organ morphogenesis histone acetyltransferase activity SCF ubiquitin ligase complex heterotrimeric G-protein complex Cul4-RING E3 ubiquitin ligase complex SCF-dependent proteasomal ubiquitin-dependent protein catabolic process negative regulation of abscisic acid-activated signaling pathway histone acetylation jasmonic acid mediated signaling pathway response to ethylene Transcription_related, Transcription regulator: AUX/IAA Transcription_related, Transcription regulator: mTERF ubiquitin-protein transferase activity | details |
| TissueCFM001460 | megagametogenesis Photosynthesis | details |
| TissueCFM001529 | ER-associated ubiquitin-dependent protein catabolic process Ubiquitin_Proteasome_system, E3: RING threonyl-tRNA aminoacylation retrograde protein transport, ER to cytosol positive regulation of RNA polymerase II transcriptional preinitiation complex assembly cullin deneddylation positive regulation of proteasomal protein catabolic process threonine-tRNA ligase activity endoplasmic reticulum lumen nuclear proteasome complex cytosolic proteasome complex proteasome regulatory particle, base subcomplex proteasome complex TBP-class protein binding proteasome-activating ATPase activity response to salt stress zinc ion binding Aminoacyl-tRNA biosynthesis Proteasome proteasome-mediated ubiquitin-dependent protein catabolic process | details |
Expression profiles
 Show details about module gene expression profiling |