TissueCFM000766's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| beta-galactosidase complex | 0.004432624 | GO:0009341 |
| hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc | 0.004432624 | cazy family |
| regulation of cell shape | 0.013283142 | GO:0008360 |
| cytoskeleton organization | 0.013283142 | GO:0007010 |
| Galactose metabolism | 0.017514326 | KEGG pathway |
| Ribosome biogenesis in eukaryotes | 0.022469848 | KEGG pathway |
| regulation of transcription from RNA polymerase II promoter | 0.023562192 | GO:0006357 |
| beta-galactosidase activity | 0.029513731 | GO:0004565 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T010128 | AT1G48870 (3.00E-11) | Transducin/WD40 repeat-like superfamily protein |
| CRO_T024865 | AT5G42960 (3.00E-83) | unknown protein |
| CRO_T025732 | AT1G67120 (1.00E-173) | MDN1|MIDASIN 1 |
| CRO_T027779 | AT1G12775 (3.00E-49) | Pentatricopeptide repeat (PPR) superfamily protein |
| CRO_T030935 | AT3G54440 (0) | glycoside hydrolase family 2 protein |
| CRO_T031830 | AT5G23110 (0.00009) | Zinc finger, C3HC4 type (RING finger) family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000765 | regulation of cell shape cytoskeleton organization myosin complex regulation of transcription from RNA polymerase II promoter ATP-dependent helicase activity motor activity actin binding nucleus Transcription_related, Transcription regulator: SNF2 | details |
| TissueCFM000852 | cyclic pyranopterin monophosphate synthase activity Mo-molybdopterin cofactor biosynthetic process molybdopterin cofactor biosynthetic process Folate biosynthesis Basal transcription factors Endocytosis | details |
| TissueCFM001165 | ErbB signaling pathway positive regulation of rRNA processing negative regulation of autophagy positive regulation of cell growth positive regulation of embryonic development rRNA transcription regulatory region DNA binding macromolecular complex binding protein self-association positive regulation of transcription, DNA-templated identical protein binding peptidase activity | details |
| TissueCFM001166 | RNA processing Spliceosome ATP-dependent RNA helicase activity organic cyclic compound binding heterocyclic compound binding poly(A) RNA binding | details |
| TissueCFM001496 | One carbon pool by folate 5-formyltetrahydrofolate cyclo-ligase activity folate transformations II folic acid-containing compound biosynthetic process potassium ion transport tetrahydrofolate interconversion cation transmembrane transport cation transmembrane transporter activity | details |
Expression profiles
 Show details about module gene expression profiling |