TissueCFM001165's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| ErbB signaling pathway | 0.001240768 | KEGG pathway |
| positive regulation of rRNA processing | 0.003385733 | GO:2000234 |
| negative regulation of autophagy | 0.003385733 | GO:0010507 |
| positive regulation of cell growth | 0.003385733 | GO:0030307 |
| positive regulation of embryonic development | 0.003385733 | GO:0040019 |
| rRNA transcription | 0.004513644 | GO:0009303 |
| regulatory region DNA binding | 0.005782675 | GO:0000975 |
| macromolecular complex binding | 0.005782675 | GO:0044877 |
| protein self-association | 0.014127074 | GO:0043621 |
| positive regulation of transcription, DNA-templated | 0.031509251 | GO:0045893 |
| identical protein binding | 0.041320203 | GO:0042802 |
| peptidase activity | 0.049123603 | GO:0008233 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T005572 | AT4G20060 (2.00E-47) | EMB1895|EMBRYO DEFECTIVE 1895 |
| CRO_T014171 | - | - |
| CRO_T014439 | AT3G61540 (8.00E-152) | alpha/beta-Hydrolases superfamily protein |
| CRO_T023412 | AT3G20720 (5.00E-71) | unknown protein |
| CRO_T030068 | AT1G50030 (0) | TOR|target of rapamycin |
| CRO_T031830 | AT5G23110 (0.00009) | Zinc finger, C3HC4 type (RING finger) family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000437 | Protein_kinases_phosphatases, PPC:4.1.2: STE20-PAK Like Protein Kinase Ubiquitin_Proteasome_system, DUB: USP receptor signaling protein serine/threonine kinase activity single-organism process Transcription_related, Transcription factor: HB chromosome | details |
| TissueCFM000766 | beta-galactosidase complex hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc regulation of cell shape cytoskeleton organization Galactose metabolism Ribosome biogenesis in eukaryotes regulation of transcription from RNA polymerase II promoter beta-galactosidase activity | details |
| TissueCFM001166 | RNA processing Spliceosome ATP-dependent RNA helicase activity organic cyclic compound binding heterocyclic compound binding poly(A) RNA binding | details |
| TissueCFM001496 | One carbon pool by folate 5-formyltetrahydrofolate cyclo-ligase activity folate transformations II folic acid-containing compound biosynthetic process potassium ion transport tetrahydrofolate interconversion cation transmembrane transport cation transmembrane transporter activity | details |
Expression profiles
 Show details about module gene expression profiling |