TissueCFM000930's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.001772133 | cazy family |
| alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity | 0.002924883 | GO:0003825 |
| uroporphyrinogen decarboxylase activity | 0.002924883 | GO:0004853 |
| protoporphyrinogen IX biosynthetic process | 0.004430659 | GO:0006782 |
| respiratory electron transport chain | 0.004430659 | GO:0022904 |
| plastid translation | 0.004430659 | GO:0032544 |
| trehalose biosynthetic process | 0.005167193 | GO:0005992 |
| 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent) | 0.005312472 | plantCyc |
| heme biosynthesis I (aerobic) | 0.005312472 | plantCyc |
| chloroplast stroma | 0.016418144 | GO:0009570 |
| Porphyrin and chlorophyll metabolism | 0.042778018 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T012237 | AT1G64150 (4.00E-39) | Uncharacterized protein family (UPF0016) |
| CRO_T019633 | AT5G02040 (5.00E-43) | PRA1.A1|prenylated RAB acceptor 1.A1 |
| CRO_T021327 | AT1G79850 (3.00E-33) | PDE347|PIGMENT DEFECTIVE 347; PRPS17|PLASTID RIBOSOMAL SMALL SUBUNIT PROTEIN 17; RPS17|ribosomal protein S17 |
| CRO_T022793 | AT1G16980 (0) | ATTPS2|trehalose-phosphatase/synthase 2; TPS2|TREHALOSE -6-PHOSPHATASE SYNTHASE S2 |
| CRO_T026111 | AT2G36885 (3.00E-65) | unknown protein |
| CRO_T030546 | AT3G14930 (2.00E-142) | HEME1|Uroporphyrinogen decarboxylase |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM001215 | Aminoacyl-tRNA biosynthesis threonyl-tRNA aminoacylation valyl-tRNA aminoacylation Photosynthesis - antenna proteins valine-tRNA ligase activity threonine-tRNA ligase activity benzoate biosynthesis III (CoA-dependent, non-β-oxidative) geraniol and geranial biosynthesis regulation of translational fidelity photosynthesis, light harvesting in photosystem I photosynthesis light reactions aminoacyl-tRNA editing activity cinnamyl-alcohol dehydrogenase activity pigment binding sinapyl alcohol dehydrogenase activity Glycolysis / Gluconeogenesis aldehyde dehydrogenase (NAD) activity response to light stimulus lignin biosynthetic process protein-chromophore linkage Phenylpropanoid biosynthesis chlorophyll binding embryo development ending in seed dormancy | details |
Expression profiles
 Show details about module gene expression profiling |