TissueCFM001215's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Aminoacyl-tRNA biosynthesis | 0.000451987 | KEGG pathway |
| threonyl-tRNA aminoacylation | 0.009027955 | GO:0006435 |
| valyl-tRNA aminoacylation | 0.009027955 | GO:0006438 |
| Photosynthesis - antenna proteins | 0.012546116 | KEGG pathway |
| valine-tRNA ligase activity | 0.013204176 | GO:0004832 |
| threonine-tRNA ligase activity | 0.013204176 | GO:0004829 |
| benzoate biosynthesis III (CoA-dependent, non-β-oxidative) | 0.013283142 | plantCyc |
| geraniol and geranial biosynthesis | 0.013283142 | plantCyc |
| regulation of translational fidelity | 0.01353393 | GO:0006450 |
| photosynthesis, light harvesting in photosystem I | 0.01353393 | GO:0009768 |
| photosynthesis light reactions | 0.014255487 | plantCyc |
| aminoacyl-tRNA editing activity | 0.014295014 | GO:0002161 |
| cinnamyl-alcohol dehydrogenase activity | 0.014295014 | GO:0045551 |
| pigment binding | 0.014295014 | GO:0031409 |
| sinapyl alcohol dehydrogenase activity | 0.014295014 | GO:0052747 |
| Glycolysis / Gluconeogenesis | 0.015236373 | KEGG pathway |
| aldehyde dehydrogenase (NAD) activity | 0.016018248 | GO:0004029 |
| response to light stimulus | 0.021027906 | GO:0009416 |
| lignin biosynthetic process | 0.021027906 | GO:0009809 |
| protein-chromophore linkage | 0.02380149 | GO:0018298 |
| Phenylpropanoid biosynthesis | 0.024997869 | KEGG pathway |
| chlorophyll binding | 0.030460297 | GO:0016168 |
| embryo development ending in seed dormancy | 0.047117465 | GO:0009793 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T011702 | AT3G19450 (9.00E-115) | CAD4|CINNAMYL ALCOHOL DEHYDROGENASE 4 |
| CRO_T012237 | AT1G64150 (4.00E-39) | Uncharacterized protein family (UPF0016) |
| CRO_T014409 | AT2G04842 (0) | EMB2761|EMBRYO DEFECTIVE 2761 |
| CRO_T016128 | AT5G16715 (1.00E-178) | EMB2247|embryo defective 2247 |
| CRO_T016370 | AT1G76570 (9.00E-135) | LHCB7|light-harvesting complex B7 |
| CRO_T031672 | AT1G79440 (5.00E-90) | ALDH5F1|aldehyde dehydrogenase 5F1; ENF1|ENLARGED FIL EXPRESSION DOMAIN 1; SSADH|SUCCINIC SEMIALDEHYDE DEHYDROGENASE; SSADH1|SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000061 | benzoate biosynthesis III (CoA-dependent, non-β-oxidative) geraniol and geranial biosynthesis heat shock protein binding cinnamyl-alcohol dehydrogenase activity aldehyde dehydrogenase (NAD) activity sinapyl alcohol dehydrogenase activity lignin biosynthetic process Glycolysis / Gluconeogenesis Phenylpropanoid biosynthesis oxidation-reduction process unfolded protein binding | details |
| TissueCFM000331 | MAPK signaling pathway - fly cell surface cytoplasmic side of plasma membrane benzoate biosynthesis III (CoA-dependent, non-β-oxidative) reactive oxygen species degradation superoxide radicals degradation Glycolysis / Gluconeogenesis chloroplast avoidance movement blue light signaling pathway negative regulation of anion channel activity by blue light phototropism regulation of proton transport chloroplast accumulation movement regulation of stomatal movement photosynthesis light reactions removal of superoxide radicals photosystem II oxygen evolving complex extrinsic component of membrane blue light photoreceptor activity signal transduction by protein phosphorylation mitochondrial matrix phosphorelay signal transduction system phosphorelay sensor kinase activity aldehyde dehydrogenase (NAD) activity superoxide dismutase activity protein autophosphorylation FMN binding identical protein binding Photosynthesis vacuole | details |
| TissueCFM000370 | benzoate biosynthesis III (CoA-dependent, non-β-oxidative) Protein_kinases_phosphatases, PPC:4.1.5.1: WNK like kinase - with no lysine kinase Protein_kinases_phosphatases, PPC:4.5.1: MAPK Family chloroplast photosystem II chloroplast thylakoid membrane photosystem I reaction center chloroplast thylakoid lumen response to wounding response to ozone photosynthesis, light harvesting mitochondrial translational elongation response to UV-B Glycolysis / Gluconeogenesis Photosynthesis - antenna proteins MAPK cascade protein-chromophore linkage photosystem I | details |
| TissueCFM000930 | formation of glycosidic bonds, GlycosylTransferases: GTnc alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity uroporphyrinogen decarboxylase activity protoporphyrinogen IX biosynthetic process respiratory electron transport chain plastid translation trehalose biosynthetic process 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent) heme biosynthesis I (aerobic) chloroplast stroma Porphyrin and chlorophyll metabolism | details |
| TissueCFM001382 | protochlorophyllide reductase activity organic acid transmembrane transporter activity pyruvate transmembrane transporter activity NADPH dehydrogenase activity GTP cyclohydrolase II activity thiamine-phosphate diphosphorylase activity blue light photoreceptor activity 3,4-dihydroxy-2-butanone-4-phosphate synthase activity cytoplasmic side of plasma membrane chloroplast envelope cell surface flavin biosynthesis I (bacteria and plants) geraniol and geranial biosynthesis thiamine diphosphate biosynthesis IV (eukaryotes) thiamine biosynthetic process blue light signaling pathway regulation of proton transport chloroplast avoidance movement negative regulation of anion channel activity by blue light plasma membrane pyruvate transport phototropism chloroplast accumulation movement regulation of stomatal movement riboflavin biosynthetic process thylakoid membrane organization chloroplast membrane cinnamyl-alcohol dehydrogenase activity sinapyl alcohol dehydrogenase activity Riboflavin metabolism Porphyrin and chlorophyll metabolism phosphorelay sensor kinase activity Phenylpropanoid biosynthesis signal transduction by protein phosphorylation vegetative to reproductive phase transition of meristem lignin biosynthetic process phosphorelay signal transduction system protein peptidyl-prolyl isomerization FMN binding identical protein binding peptidyl-prolyl cis-trans isomerase activity protein autophosphorylation | details |
| TissueCFM001404 | benzoate biosynthesis III (CoA-dependent, non-β-oxidative) Glycolysis / Gluconeogenesis oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor aldehyde dehydrogenase (NAD) activity sulfate assimilation carbohydrate transmembrane transport cellular response to oxidative stress glycerol ether metabolic process chloroplast thylakoid lumen response to stimulus regulation of catalytic activity | details |
| TissueCFM001690 | Ribosome translation Protein_kinases_phosphatases, PPC:4.5.7: Unknown Function Kinase structural constituent of ribosome geraniol and geranial biosynthesis cell morphogenesis protein serine/threonine/tyrosine kinase activity sinapyl alcohol dehydrogenase activity cinnamyl-alcohol dehydrogenase activity Phenylpropanoid biosynthesis lignin biosynthetic process cell wall organization or biogenesis O-acetyltransferase activity | details |
| TissueCFM001747 | geraniol and geranial biosynthesis Phenylpropanoid biosynthesis sinapyl alcohol dehydrogenase activity cinnamyl-alcohol dehydrogenase activity lignin biosynthetic process | details |
Expression profiles
 Show details about module gene expression profiling |