TissueCFM000949's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| starch biosynthesis | 0.004542899 | plantCyc |
| Cell cycle - yeast | 0.008678961 | KEGG pathway |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.009097083 | cazy family |
| MAP kinase kinase kinase activity | 0.012391922 | GO:0004709 |
| NF-kappa B signaling pathway | 0.014217905 | KEGG pathway |
| chromosome organization | 0.015896204 | GO:0051276 |
| activation of MAPKK activity | 0.015896204 | GO:0000186 |
| MAPK cascade | 0.015896204 | GO:0000165 |
| plant-type cell wall organization | 0.015896204 | GO:0009664 |
| Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII | 0.022678282 | kinase family |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T012195 | AT1G33590 (2.00E-18) | Leucine-rich repeat (LRR) family protein |
| CRO_T020343 | AT4G26620 (2.00E-85) | Sucrase/ferredoxin-like family protein |
| CRO_T021676 | AT2G42840 (6.00E-23) | PDF1|protodermal factor 1 |
| CRO_T021827 | AT5G15080 (2.00E-158) | Protein kinase superfamily protein |
| CRO_T025030 | AT2G03090 (3.00E-100) | ATEXPA15|expansin A15; EXP15|EXPANSIN 15 |
| CRO_T026097 | AT3G01180 (0) | AtSS2|starch synthase 2 |
| CRO_T028055 | AT1G34640 (6.00E-20) | peptidases |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000423 | mitochondria-associated ubiquitin-dependent protein catabolic process nucleus-associated proteasomal ubiquitin-dependent protein catabolic process starch biosynthesis Cytochrome_P450, Cytochrome P450: CYP86A formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: C2C2-GATA Cell cycle - yeast Cutin, suberine and wax biosynthesis chromosome organization spliceosomal complex assembly ER-associated ubiquitin-dependent protein catabolic process Cdc48p-Npl4p-Vms1p AAA ATPase complex prespliceosome post-mRNA release spliceosomal complex Prp19 complex catalytic step 1 spliceosome precatalytic spliceosome positive regulation of transcription, DNA-templated chromosome catalytic step 2 spliceosome | details |
| TissueCFM000499 | adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc plant-type cell wall organization cellulose biosynthetic process guard cell differentiation protein catabolic process MAPK cascade cellulose catabolic process activation of MAPKK activity MAP kinase kinase kinase activity phosphoprotein phosphatase activity cellulose synthase (UDP-forming) activity aspartic-type endopeptidase activity cellulase activity | details |
| TissueCFM000664 | Cytochrome_P450, Cytochrome P450: CYP714A Transcription_related, Transcription factor: LFY gibberellin biosynthesis III (early C-13 hydroxylation) homogalacturonan degradation hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc localization cutin biosynthetic process cell differentiation trichome morphogenesis flower development | details |
| TissueCFM001204 | 2-oxoglutarate decarboxylation to succinyl-CoA 2-oxoisovalerate decarboxylation to isobutanoyl-CoA glycine cleavage pyruvate decarboxylation to acetyl CoA Transcription_related, Transcription factor: DBP Transcription_related, Transcription factor: GRF | details |
Expression profiles
 Show details about module gene expression profiling |