TissueCFM000951's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| lipoate biosynthesis and incorporation I | 0.002127502 | plantCyc |
| Lipoic acid metabolism | 0.002659181 | KEGG pathway |
| UDP-D-xylose biosynthesis | 0.003189368 | plantCyc |
| chloroplast relocation | 0.006434743 | GO:0009902 |
| lipoate biosynthetic process | 0.006434743 | GO:0009107 |
| protein lipoylation | 0.006434743 | GO:0009249 |
| UDP-glucuronate decarboxylase activity | 0.008044024 | GO:0048040 |
| lipoate synthase activity | 0.008044024 | GO:0016992 |
| alkaloid metabolic process | 0.011254147 | GO:0009820 |
| Amino sugar and nucleotide sugar metabolism | 0.021418771 | KEGG pathway |
| single-organism process | 0.025034386 | GO:0044699 |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.042670298 | cazy family |
| 4 iron, 4 sulfur cluster binding | 0.047055819 | GO:0051539 |
| ATPase activity | 0.047270771 | GO:0016887 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002470 | AT5G28840 (9.00E-25) | GME|GDP-D-mannose 3',5'-epimerase |
| CRO_T003370 | - | - |
| CRO_T004977 | AT2G20860 (2.00E-164) | LIP1|lipoic acid synthase 1 |
| CRO_T005874 | AT1G42550 (0) | PMI1|PLASTID MOVEMENT IMPAIRED1 |
| CRO_T006508 | AT1G63400 (3.00E-29) | Pentatricopeptide repeat (PPR) superfamily protein |
| CRO_T018936 | AT1G60690 (9.00E-108) | NAD(P)-linked oxidoreductase superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000268 | oxidoreductase activity quinone binding photosystem II reaction center plastid chromosome transcription from plastid promoter alkaloid metabolic process chloroplast positive regulation of transcription, DNA-templated | details |
| TissueCFM000607 | DNA integration alkaloid metabolic process mitochondrial electron transport, NADH to ubiquinone photosynthesis, light reaction | details |
| TissueCFM000717 | Transcription_related, Transcription factor: WRKY lipoate biosynthesis and incorporation I Lipoic acid metabolism Tropane, piperidine and pyridine alkaloid biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc polyamine transport microtubule severing protein lipoylation glycolipid metabolic process lipoate biosynthetic process periplasmic space Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase polyamine binding lipoate synthase activity glucosyltransferase activity | details |
| TissueCFM000843 | UDP-D-xylose biosynthesis regulation of peroxisome size cellular response to redox state photosystem stoichiometry adjustment peroxisome fission UDP-glucuronate decarboxylase activity plastid sigma factor activity DNA-templated transcription, initiation malate transmembrane transport integral component of peroxisomal membrane Amino sugar and nucleotide sugar metabolism malate transmembrane transporter activity regulation of catalytic activity response to stimulus identical protein binding intracellular part integral component of membrane plant-type vacuole membrane regulation of cellular process | details |
| TissueCFM001334 | Protein_kinases_phosphatases, PPC:4.1.2: STE20-PAK Like Protein Kinase chloroplast relocation cellular response to redox state photosystem stoichiometry adjustment UDP-D-xylose biosynthesis photosynthesis light reactions plastid sigma factor activity UDP-glucuronate decarboxylase activity DNA-templated transcription, initiation Amino sugar and nucleotide sugar metabolism photosystem II oxygen evolving complex chloroplast part extrinsic component of membrane | details |
Expression profiles
 Show details about module gene expression profiling |