TissueCFM000717's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Transcription_related, Transcription factor: WRKY | 0.001603886 | TF family |
| lipoate biosynthesis and incorporation I | 0.001653746 | plantCyc |
| Lipoic acid metabolism | 0.0037195 | KEGG pathway |
| Tropane, piperidine and pyridine alkaloid biosynthesis | 0.0037195 | KEGG pathway |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.010331946 | cazy family |
| polyamine transport | 0.022575817 | GO:0015846 |
| microtubule severing | 0.022575817 | GO:0051013 |
| protein lipoylation | 0.022575817 | GO:0009249 |
| glycolipid metabolic process | 0.022575817 | GO:0006664 |
| lipoate biosynthetic process | 0.022575817 | GO:0009107 |
| periplasmic space | 0.03158524 | GO:0042597 |
| Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase | 0.03314517 | kinase family |
| polyamine binding | 0.039022646 | GO:0019808 |
| lipoate synthase activity | 0.039022646 | GO:0016992 |
| glucosyltransferase activity | 0.043341843 | GO:0046527 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003924 | AT1G10750 (7.00E-120) | Protein of Unknown Function (DUF239) |
| CRO_T004977 | AT2G20860 (2.00E-164) | LIP1|lipoic acid synthase 1 |
| CRO_T005199 | AT1G63420 (1.00E-142) | Arabidopsis thaliana protein of unknown function (DUF821) |
| CRO_T005483 | AT2G29170 (1.00E-17) | NAD(P)-binding Rossmann-fold superfamily protein |
| CRO_T010997 | AT1G80350 (2.00E-165) | BOT1|BOTERO 1; ERH3|ECTOPIC ROOT HAIR 3; FRA2|FRAGILE FIBER 2; FRC2|FURCA2; FTR|FAT ROOT; KTN1|KATANIN 1 |
| CRO_T013649 | AT3G50950 (0) | ZAR1|HOPZ-ACTIVATED RESISTANCE 1 |
| CRO_T021242 | AT5G09330 (8.00E-35) | ANAC082|NAC domain containing protein 82; VNI1|VND-interacting 1 |
| CRO_T025351 | AT2G01190 (2.00E-91) | PDE331|PIGMENT DEFECTIVE 331 |
| CRO_T026703 | AT1G31410 (3.00E-85) | ENF2|ENLARGED FIL EXPRESSION DOMAIN 2 |
| CRO_T027645 | AT1G49580 (0) | Calcium-dependent protein kinase (CDPK) family protein |
| CRO_T029498 | AT2G38160 (4.00E-10) | unknown protein |
| CRO_T030654 | AT5G64810 (8.00E-22) | ATWRKY51|WRKY DNA-BINDING PROTEIN 51 |
| CRO_T031986 | AT1G55600 (1.00E-19) | MINI3|MINISEED 3; WRKY10|WRKY DNA-binding protein 10 |
| CRO_T032330 | AT1G71860 (2.00E-83) | PTP1|protein tyrosine phosphatase 1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000188 | details | |
| TissueCFM000378 | indole-3-acetate biosynthesis I Tryptophan metabolism N,N-dimethylaniline monooxygenase activity secondary active sulfate transmembrane transporter activity sulfate transmembrane transport cellular protein metabolic process response to stress NADP binding | details |
| TissueCFM000822 | cysteinyl-tRNA aminoacylation tRNA wobble position uridine thiolation regulation of programmed cell death cristae formation sulfurtransferase activity cysteine-tRNA ligase activity L-alanine biosynthesis III molybdenum cofactor biosynthesis polar nucleus fusion Aminoacyl-tRNA biosynthesis methyltransferase activity | details |
| TissueCFM000951 | lipoate biosynthesis and incorporation I Lipoic acid metabolism UDP-D-xylose biosynthesis chloroplast relocation lipoate biosynthetic process protein lipoylation UDP-glucuronate decarboxylase activity lipoate synthase activity alkaloid metabolic process Amino sugar and nucleotide sugar metabolism single-organism process formation of glycosidic bonds, GlycosylTransferases: GTnc 4 iron, 4 sulfur cluster binding ATPase activity | details |
| TissueCFM001117 | Transcription_related, Transcription factor: WRKY cellular transition metal ion homeostasis metal ion transport baicalein degradation (hydrogen peroxide detoxification) transition metal ion binding intracellular signal transduction formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:4.1.5.1: WNK like kinase - with no lysine kinase glycolipid metabolic process cytoplasm Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase glucosyltransferase activity Phenylpropanoid biosynthesis transcription factor activity, sequence-specific DNA binding | details |
| TissueCFM001263 | 5-deoxystrigol biosynthesis sulfur compound metabolic process purine ribonucleotide metabolic process adenylylsulfatase activity drug transmembrane transport | details |
| TissueCFM001538 | Transcription_related, Transcription factor: WRKY formation of glycosidic bonds, GlycosylTransferases: GTnc clathrin heavy chain binding UDP-arabinopyranose mutase activity sequence-specific DNA binding clathrin coat of trans-Golgi network vesicle clathrin coat of coated pit transcription factor activity, sequence-specific DNA binding UDP-L-arabinose metabolic process plant-type cell wall biogenesis clathrin-mediated endocytosis Amino sugar and nucleotide sugar metabolism structural molecule activity ribosome binding regulation of transcription, DNA-templated cellulose biosynthetic process | details |
| TissueCFM001634 | baicalein degradation (hydrogen peroxide detoxification) formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase glucosyltransferase activity glycolipid metabolic process Phenylpropanoid biosynthesis calcium-dependent protein serine/threonine kinase activity calmodulin-dependent protein kinase activity peptidyl-serine phosphorylation hydrogen peroxide catabolic process protein autophosphorylation abscisic acid-activated signaling pathway | details |
| TissueCFM001823 | fructose 1,6-bisphosphate 1-phosphatase activity Transcription_related, Transcription factor: NAC Calvin-Benson-Bassham cycle gluconeogenesis I glycolysis I (from glucose 6-phosphate) sucrose biosynthesis I (from photosynthesis) very long chain fatty acid biosynthesis I very long chain fatty acid biosynthesis II Fatty acid metabolism dephosphorylation | details |
| TissueCFM001842 | response to stress Transcription_related, Transcription factor: NAC Spliceosome | details |
Expression profiles
 Show details about module gene expression profiling |