TissueCFM000954's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| syntaxin binding | 0.000886394 | GO:0019905 |
| GARP complex | 0.002925532 | GO:0000938 |
| Golgi to vacuole transport | 0.003985826 | GO:0006896 |
| retrograde transport, endosome to Golgi | 0.003985826 | GO:0042147 |
| Golgi membrane | 0.031065353 | GO:0000139 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001373 | - | - |
| CRO_T003638 | AT4G19490 (2.00E-27) | ATVPS54|VPS54 HOMOLOG |
| CRO_T006494 | - | - |
| CRO_T023915 | AT4G17620 (9.00E-21) | glycine-rich protein |
| CRO_T026470 | AT4G05400 (2.00E-52) | copper ion binding |
| CRO_T028321 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM001005 | Transcription_related, Transcription regulator: MED6 coenzyme A biosynthesis I RNA polymerase II transcription coactivator activity involved in preinitiation complex assembly RNA polymerase II transcriptional preinitiation complex assembly poly(A) RNA binding core mediator complex mediator complex spliceosomal complex RNA processing regulation of transcription from RNA polymerase II promoter ATP-dependent RNA helicase activity | details |
| TissueCFM001111 | low-affinity nitrate transport low-affinity nitrate transmembrane transporter activity oligopeptide transport ATP-dependent helicase activity poly(A) RNA binding RNA processing spliceosomal complex ATP-dependent RNA helicase activity intracellular part | details |
| TissueCFM001268 | ribosome biogenesis nucleolus Purine metabolism Ribosome biogenesis in eukaryotes | details |
Expression profiles
 Show details about module gene expression profiling |