TissueCFM001005's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Transcription_related, Transcription regulator: MED6 | 0.000531915 | TF family |
| coenzyme A biosynthesis I | 0.001063594 | plantCyc |
| RNA polymerase II transcription coactivator activity involved in preinitiation complex assembly | 0.002925532 | GO:0001128 |
| RNA polymerase II transcriptional preinitiation complex assembly | 0.003900421 | GO:0051123 |
| poly(A) RNA binding | 0.011683984 | GO:0044822 |
| core mediator complex | 0.011815964 | GO:0070847 |
| mediator complex | 0.013764936 | GO:0016592 |
| spliceosomal complex | 0.013764936 | GO:0005681 |
| RNA processing | 0.017809695 | GO:0006396 |
| regulation of transcription from RNA polymerase II promoter | 0.017809695 | GO:0006357 |
| ATP-dependent RNA helicase activity | 0.020388144 | GO:0004004 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001772 | - | - |
| CRO_T002191 | AT1G32490 (9.00E-32) | EMB2733|EMBRYO DEFECTIVE 2733; ESP3|ENHANCED SILENCING PHENOTYPE 3 |
| CRO_T022589 | AT3G21350 (4.00E-65) | MED6|RNA polymerase transcriptional regulation mediator-related |
| CRO_T023915 | AT4G17620 (9.00E-21) | glycine-rich protein |
| CRO_T026727 | - | - |
| CRO_T033243 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000954 | syntaxin binding GARP complex Golgi to vacuole transport retrograde transport, endosome to Golgi Golgi membrane | details |
| TissueCFM001111 | low-affinity nitrate transport low-affinity nitrate transmembrane transporter activity oligopeptide transport ATP-dependent helicase activity poly(A) RNA binding RNA processing spliceosomal complex ATP-dependent RNA helicase activity intracellular part | details |
Expression profiles
 Show details about module gene expression profiling |