TissueCFM000989's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| ribosome biogenesis | 0.005485094 | GO:0042254 |
| RNA polymerase II transcription factor activity, sequence-specific DNA binding | 0.005909729 | GO:0000981 |
| Ribosome biogenesis in eukaryotes | 0.014979899 | KEGG pathway |
| nucleoplasm | 0.025311558 | GO:0005654 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000746 | - | - |
| CRO_T004109 | - | - |
| CRO_T011358 | AT3G07050 (5.00E-177) | NSN1|nucleostemin-like 1 |
| CRO_T015160 | AT1G19260 (1.00E-10) | TTF-type zinc finger protein with HAT dimerisation domain |
| CRO_T020321 | - | - |
| CRO_T027036 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000109 | details | |
| TissueCFM000230 | clathrin vesicle coat | details |
| TissueCFM000239 | ribosome biogenesis chitin catabolic process protein glycosylation chitin binding galactosyltransferase activity chitinase activity Amino sugar and nucleotide sugar metabolism Ribosome biogenesis in eukaryotes GTPase activity | details |
| TissueCFM000246 | details | |
| TissueCFM000263 | response to hypoxia ent-kaurene biosynthesis I Taurine and hypotaurine metabolism aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation | details |
| TissueCFM000309 | Protein_kinases_phosphatases, PPC:1.9.2: S Domain Kinase (Type 2) tRNA (m1A) methyltransferase complex viral envelope Ribosome biogenesis in eukaryotes protein phosphorylation recognition of pollen chaperone-mediated protein folding tRNA methylation protein peptidyl-prolyl isomerization ribosome biogenesis tRNA (adenine-N1-)-methyltransferase activity | details |
| TissueCFM000349 | Transcription_related, Transcription factor: MYB-related Ribosome biogenesis in eukaryotes ribosome biogenesis | details |
| TissueCFM000399 | membrane coat Ribosome biogenesis in eukaryotes structural molecule activity ribosome biogenesis nucleolus vesicle-mediated transport Ubiquitin_Proteasome_system, E3 adaptor: DWD intracellular protein transport GTPase activity | details |
| TissueCFM000429 | ribosome biogenesis Ribosome biogenesis in eukaryotes nucleolus | details |
| TissueCFM000447 | post-embryonic root development arginine biosynthetic process via ornithine urea cycle L-citrulline degradation L-arginine biosynthesis I (via L-ornithine) ornithine carbamoyltransferase activity L-arginine biosynthesis II (acetyl cycle) ornithine-citrulline shuttle ribosome biogenesis | details |
| TissueCFM000450 | mRNA splice site selection U1 snRNP U2-type prespliceosome ribosome biogenesis Ribosome biogenesis in eukaryotes mRNA binding nucleolus | details |
| TissueCFM000451 | mRNA splice site selection U1 snRNP U2-type prespliceosome mediator complex ribosome biogenesis regulation of transcription from RNA polymerase II promoter Proteasome Ribosome biogenesis in eukaryotes RNA polymerase II transcription cofactor activity mRNA binding | details |
| TissueCFM000459 | Ribosome biogenesis in eukaryotes ribosome biogenesis | details |
| TissueCFM000536 | post-embryonic root development MAPK signaling pathway - yeast ribosome biogenesis protein domain specific binding Ribosome biogenesis in eukaryotes | details |
| TissueCFM000562 | details | |
| TissueCFM000619 | ribosome biogenesis Ribosome biogenesis in eukaryotes nucleolus | details |
| TissueCFM000752 | post-embryonic root development ribosome biogenesis Autophagy - animal MAPK signaling pathway - yeast protein domain specific binding | details |
| TissueCFM000794 | ribosome biogenesis Ribosome biogenesis in eukaryotes nucleolus GTP binding GTPase activity | details |
| TissueCFM000862 | ribosome biogenesis Ribosome biogenesis in eukaryotes nucleolus GTP binding GTPase activity | details |
| TissueCFM000871 | ribosome biogenesis nucleolus Cell cycle - Caulobacter Ribosome biogenesis in eukaryotes GTPase activity GTP binding | details |
| TissueCFM000877 | membrane coat Ribosome biogenesis in eukaryotes structural molecule activity ribosome biogenesis nucleolus vesicle-mediated transport Ubiquitin_Proteasome_system, E3 adaptor: DWD intracellular protein transport GTPase activity | details |
| TissueCFM000935 | Longevity regulating pathway - worm ribosome biogenesis Autophagy - animal nucleolus Ribosome biogenesis in eukaryotes GTPase activity GTP binding | details |
| TissueCFM000943 | ribosome biogenesis Ribosome biogenesis in eukaryotes nucleolus GTP binding GTPase activity | details |
| TissueCFM000963 | ribosome biogenesis Ribosome biogenesis in eukaryotes nucleolus | details |
| TissueCFM000966 | nucleolus maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) ribosome biogenesis Ribosome biogenesis in eukaryotes small-subunit processome | details |
| TissueCFM000990 | RNA polymerase II transcription factor activity, sequence-specific DNA binding tRNA (adenine-N1-)-methyltransferase activity tRNA methylation ribosome biogenesis tRNA (m1A) methyltransferase complex Ribosome biogenesis in eukaryotes nucleoplasm | details |
| TissueCFM001000 | Transcription_related, Transcription factor: B3 | details |
| TissueCFM001010 | post-embryonic root development MAPK signaling pathway - yeast ribosome biogenesis protein domain specific binding Ribosome biogenesis in eukaryotes | details |
| TissueCFM001015 | ribosome biogenesis Ribosome biogenesis in eukaryotes nucleolus formation of glycosidic bonds, GlycosylTransferases: GTnc GTPase activity GTP binding | details |
| TissueCFM001057 | ribosome biogenesis Ribosome biogenesis in eukaryotes nucleolus GTP binding GTPase activity | details |
| TissueCFM001202 | ribosome biogenesis Ribosome biogenesis in eukaryotes | details |
| TissueCFM001203 | Longevity regulating pathway - worm ribosome biogenesis nucleolus Ribosome biogenesis in eukaryotes GTPase activity GTP binding | details |
| TissueCFM001208 | ribosome biogenesis regulation of transcription from RNA polymerase II promoter mediator complex Proteasome Ribosome biogenesis in eukaryotes RNA polymerase II transcription cofactor activity nucleolus | details |
| TissueCFM001268 | ribosome biogenesis nucleolus Purine metabolism Ribosome biogenesis in eukaryotes | details |
| TissueCFM001289 | post-embryonic root development MAPK signaling pathway - yeast ribosome biogenesis protein domain specific binding Ribosome biogenesis in eukaryotes | details |
| TissueCFM001290 | post-embryonic root development MAPK signaling pathway - yeast ribosome biogenesis protein domain specific binding Ribosome biogenesis in eukaryotes | details |
| TissueCFM001352 | post-embryonic root development MAPK signaling pathway - yeast ribosome biogenesis protein domain specific binding Ribosome biogenesis in eukaryotes | details |
| TissueCFM001474 | post-embryonic root development MAPK signaling pathway - yeast ribosome biogenesis protein domain specific binding Ribosome biogenesis in eukaryotes | details |
Expression profiles
 Show details about module gene expression profiling |