TissueCFM000263's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| response to hypoxia | 0.020553028 | GO:0001666 |
| ent-kaurene biosynthesis I | 0.031467377 | plantCyc |
| Taurine and hypotaurine metabolism | 0.032347061 | KEGG pathway |
| aerobic respiration I (cytochrome c) | 0.042924255 | plantCyc |
| aerobic respiration III (alternative oxidase pathway) | 0.042924255 | plantCyc |
| NAD/NADH phosphorylation and dephosphorylation | 0.042924255 | plantCyc |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002569 | - | - |
| CRO_T004227 | - | - |
| CRO_T005024 | ATCG00190 (5.00E-07) | RPOB|RNA polymerase subunit beta |
| CRO_T006744 | - | - |
| CRO_T007599 | AT1G18490 (6.00E-12) | Protein of unknown function (DUF1637) |
| CRO_T009836 | AT1G79460 (0) | ATKS|ENT-KAURENE SYNTHASE; ATKS1|ENT-KAURENE SYNTHASE 1; GA2|GA REQUIRING 2 |
| CRO_T011358 | AT3G07050 (5.00E-177) | NSN1|nucleostemin-like 1 |
| CRO_T012142 | - | - |
| CRO_T012155 | AT4G20190 (6.00E-24) | unknown protein |
| CRO_T014555 | AT2G47690 (7.00E-06) | NADH-ubiquinone oxidoreductase-related |
| CRO_T021974 | - | - |
| CRO_T022027 | - | - |
| CRO_T026092 | AT5G44710 (1.00E-25) | |
| CRO_T027341 | - | - |
| CRO_T028424 | AT5G14600 (5.00E-92) | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
| CRO_T029226 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000012 | ent-kaurene biosynthesis I Diterpenoid biosynthesis | details |
| TissueCFM000054 | ent-kaurene biosynthesis I DNA-directed DNA polymerase activity 3'-5' exonuclease activity | details |
| TissueCFM000059 | large ribosomal subunit chloroplast ent-kaurene biosynthesis I rRNA binding Ribosome Diterpenoid biosynthesis transferase activity translation structural constituent of ribosome small ribosomal subunit RNA methyltransferase activity terpene synthase activity RNA methylation RNA processing | details |
| TissueCFM000072 | details | |
| TissueCFM000099 | ent-kaurene biosynthesis I integral component of lumenal side of endoplasmic reticulum membrane Golgi-associated vesicle membrane integral component of cytoplasmic side of endoplasmic reticulum membrane lysosomal membrane aspartic endopeptidase activity, intramembrane cleaving Diterpenoid biosynthesis terpene synthase activity membrane protein proteolysis pollen germination signal peptide processing pollen development | details |
| TissueCFM000100 | ent-kaurene biosynthesis I | details |
| TissueCFM000109 | details | |
| TissueCFM000114 | ent-kaurene biosynthesis I Diterpenoid biosynthesis terpene synthase activity Transcription_related, Transcription factor: bHLH | details |
| TissueCFM000115 | ent-kaurene biosynthesis I multi-organism process metabolic process arginine biosynthetic process 2-Oxocarboxylic acid metabolism Diterpenoid biosynthesis root development Transcription_related, Transcription factor: bHLH terpene synthase activity N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity | details |
| TissueCFM000155 | ent-kaurene biosynthesis I | details |
| TissueCFM000163 | Cytochrome_P450, Cytochrome P450: CYP81K | details |
| TissueCFM000169 | ent-kaurene biosynthesis I hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc | details |
| TissueCFM000170 | ent-kaurene biosynthesis I terpene synthase activity Diterpenoid biosynthesis Zeatin biosynthesis | details |
| TissueCFM000198 | ent-kaurene biosynthesis I Diterpenoid biosynthesis | details |
| TissueCFM000208 | Diterpenoid biosynthesis ent-kaurene biosynthesis I | details |
| TissueCFM000216 | ent-kaurene biosynthesis I Diterpenoid biosynthesis terpene synthase activity | details |
| TissueCFM000230 | clathrin vesicle coat | details |
| TissueCFM000239 | ribosome biogenesis chitin catabolic process protein glycosylation chitin binding galactosyltransferase activity chitinase activity Amino sugar and nucleotide sugar metabolism Ribosome biogenesis in eukaryotes GTPase activity | details |
| TissueCFM000246 | details | |
| TissueCFM000280 | ent-kaurene biosynthesis I Diterpenoid biosynthesis terpene synthase activity Transcription_related, Transcription factor: bHLH | details |
| TissueCFM000309 | Protein_kinases_phosphatases, PPC:1.9.2: S Domain Kinase (Type 2) tRNA (m1A) methyltransferase complex viral envelope Ribosome biogenesis in eukaryotes protein phosphorylation recognition of pollen chaperone-mediated protein folding tRNA methylation protein peptidyl-prolyl isomerization ribosome biogenesis tRNA (adenine-N1-)-methyltransferase activity | details |
| TissueCFM000349 | Transcription_related, Transcription factor: MYB-related Ribosome biogenesis in eukaryotes ribosome biogenesis | details |
| TissueCFM000394 | ent-kaurene biosynthesis I Diterpenoid biosynthesis zinc ion transmembrane transporter activity terpene synthase activity zinc II ion transmembrane transport | details |
| TissueCFM000399 | membrane coat Ribosome biogenesis in eukaryotes structural molecule activity ribosome biogenesis nucleolus vesicle-mediated transport Ubiquitin_Proteasome_system, E3 adaptor: DWD intracellular protein transport GTPase activity | details |
| TissueCFM000429 | ribosome biogenesis Ribosome biogenesis in eukaryotes nucleolus | details |
| TissueCFM000434 | ent-kaurene biosynthesis I terpene synthase activity Diterpenoid biosynthesis Photosynthesis | details |
| TissueCFM000447 | post-embryonic root development arginine biosynthetic process via ornithine urea cycle L-citrulline degradation L-arginine biosynthesis I (via L-ornithine) ornithine carbamoyltransferase activity L-arginine biosynthesis II (acetyl cycle) ornithine-citrulline shuttle ribosome biogenesis | details |
| TissueCFM000450 | mRNA splice site selection U1 snRNP U2-type prespliceosome ribosome biogenesis Ribosome biogenesis in eukaryotes mRNA binding nucleolus | details |
| TissueCFM000451 | mRNA splice site selection U1 snRNP U2-type prespliceosome mediator complex ribosome biogenesis regulation of transcription from RNA polymerase II promoter Proteasome Ribosome biogenesis in eukaryotes RNA polymerase II transcription cofactor activity mRNA binding | details |
| TissueCFM000454 | ent-kaurene biosynthesis I Diterpenoid biosynthesis terpene synthase activity Transcription_related, Transcription factor: bHLH | details |
| TissueCFM000459 | Ribosome biogenesis in eukaryotes ribosome biogenesis | details |
| TissueCFM000462 | Transcription_related, Transcription factor: AP2 metabolic process ent-kaurene biosynthesis I Transcription_related, Transcription factor: PLATZ Diterpenoid biosynthesis single-organism process | details |
| TissueCFM000491 | details | |
| TissueCFM000505 | ent-kaurene biosynthesis I hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc homogalacturonan degradation Diterpenoid biosynthesis terpene synthase activity polygalacturonase activity lyase activity Photosynthesis | details |
| TissueCFM000521 | ent-kaurene biosynthesis I Diterpenoid biosynthesis terpene synthase activity Transcription_related, Transcription factor: bHLH | details |
| TissueCFM000536 | post-embryonic root development MAPK signaling pathway - yeast ribosome biogenesis protein domain specific binding Ribosome biogenesis in eukaryotes | details |
| TissueCFM000541 | ent-kaurene biosynthesis I Diterpenoid biosynthesis terpene synthase activity | details |
| TissueCFM000562 | details | |
| TissueCFM000612 | intracellular protein transport response to hypoxia Golgi apparatus phosphatidylethanolamine biosynthesis I Taurine and hypotaurine metabolism aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation clathrin adaptor complex Ran GTPase binding protein transporter activity NADH dehydrogenase (ubiquinone) activity cellular metabolic process single-organism cellular process Lysosome vesicle-mediated transport oxidation-reduction process | details |
| TissueCFM000619 | ribosome biogenesis Ribosome biogenesis in eukaryotes nucleolus | details |
| TissueCFM000672 | Diterpenoid biosynthesis ent-kaurene biosynthesis I phosphatidylinositol-3-phosphate binding phosphatidylinositol-3,5-bisphosphate binding adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc leaf senescence autophagic cell death protein lipidation nucleophagy protein localization to pre-autophagosomal structure mitophagy | details |
| TissueCFM000700 | ent-kaurene biosynthesis I | details |
| TissueCFM000710 | ent-kaurene biosynthesis I Diterpenoid biosynthesis terpene synthase activity | details |
| TissueCFM000713 | ent-kaurene biosynthesis I Diterpenoid biosynthesis terpene synthase activity | details |
| TissueCFM000752 | post-embryonic root development ribosome biogenesis Autophagy - animal MAPK signaling pathway - yeast protein domain specific binding | details |
| TissueCFM000773 | ent-kaurene biosynthesis I Diterpenoid biosynthesis terpene synthase activity | details |
| TissueCFM000794 | ribosome biogenesis Ribosome biogenesis in eukaryotes nucleolus GTP binding GTPase activity | details |
| TissueCFM000798 | ent-kaurene biosynthesis I Diterpenoid biosynthesis terpene synthase activity | details |
| TissueCFM000799 | ent-kaurene biosynthesis I terpene synthase activity Diterpenoid biosynthesis Photosynthesis | details |
| TissueCFM000862 | ribosome biogenesis Ribosome biogenesis in eukaryotes nucleolus GTP binding GTPase activity | details |
| TissueCFM000871 | ribosome biogenesis nucleolus Cell cycle - Caulobacter Ribosome biogenesis in eukaryotes GTPase activity GTP binding | details |
| TissueCFM000877 | membrane coat Ribosome biogenesis in eukaryotes structural molecule activity ribosome biogenesis nucleolus vesicle-mediated transport Ubiquitin_Proteasome_system, E3 adaptor: DWD intracellular protein transport GTPase activity | details |
| TissueCFM000880 | ent-kaurene biosynthesis I aerobic electron transport chain cytochrome-c oxidase activity terpene synthase activity Diterpenoid biosynthesis hydrogen ion transmembrane transport | details |
| TissueCFM000935 | Longevity regulating pathway - worm ribosome biogenesis Autophagy - animal nucleolus Ribosome biogenesis in eukaryotes GTPase activity GTP binding | details |
| TissueCFM000943 | ribosome biogenesis Ribosome biogenesis in eukaryotes nucleolus GTP binding GTPase activity | details |
| TissueCFM000963 | ribosome biogenesis Ribosome biogenesis in eukaryotes nucleolus | details |
| TissueCFM000966 | nucleolus maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) ribosome biogenesis Ribosome biogenesis in eukaryotes small-subunit processome | details |
| TissueCFM000989 | ribosome biogenesis RNA polymerase II transcription factor activity, sequence-specific DNA binding Ribosome biogenesis in eukaryotes nucleoplasm | details |
| TissueCFM000990 | RNA polymerase II transcription factor activity, sequence-specific DNA binding tRNA (adenine-N1-)-methyltransferase activity tRNA methylation ribosome biogenesis tRNA (m1A) methyltransferase complex Ribosome biogenesis in eukaryotes nucleoplasm | details |
| TissueCFM001000 | Transcription_related, Transcription factor: B3 | details |
| TissueCFM001010 | post-embryonic root development MAPK signaling pathway - yeast ribosome biogenesis protein domain specific binding Ribosome biogenesis in eukaryotes | details |
| TissueCFM001015 | ribosome biogenesis Ribosome biogenesis in eukaryotes nucleolus formation of glycosidic bonds, GlycosylTransferases: GTnc GTPase activity GTP binding | details |
| TissueCFM001057 | ribosome biogenesis Ribosome biogenesis in eukaryotes nucleolus GTP binding GTPase activity | details |
| TissueCFM001092 | ent-kaurene biosynthesis I Diterpenoid biosynthesis terpene synthase activity 3'-5' exonuclease activity DNA-directed DNA polymerase activity nucleic acid phosphodiester bond hydrolysis DNA biosynthetic process DNA replication | details |
| TissueCFM001171 | ent-kaurene biosynthesis I Diterpenoid biosynthesis terpene synthase activity | details |
| TissueCFM001202 | ribosome biogenesis Ribosome biogenesis in eukaryotes | details |
| TissueCFM001203 | Longevity regulating pathway - worm ribosome biogenesis nucleolus Ribosome biogenesis in eukaryotes GTPase activity GTP binding | details |
| TissueCFM001208 | ribosome biogenesis regulation of transcription from RNA polymerase II promoter mediator complex Proteasome Ribosome biogenesis in eukaryotes RNA polymerase II transcription cofactor activity nucleolus | details |
| TissueCFM001268 | ribosome biogenesis nucleolus Purine metabolism Ribosome biogenesis in eukaryotes | details |
| TissueCFM001289 | post-embryonic root development MAPK signaling pathway - yeast ribosome biogenesis protein domain specific binding Ribosome biogenesis in eukaryotes | details |
| TissueCFM001290 | post-embryonic root development MAPK signaling pathway - yeast ribosome biogenesis protein domain specific binding Ribosome biogenesis in eukaryotes | details |
| TissueCFM001352 | post-embryonic root development MAPK signaling pathway - yeast ribosome biogenesis protein domain specific binding Ribosome biogenesis in eukaryotes | details |
| TissueCFM001474 | post-embryonic root development MAPK signaling pathway - yeast ribosome biogenesis protein domain specific binding Ribosome biogenesis in eukaryotes | details |
Expression profiles
 Show details about module gene expression profiling |