TissueCFM001048's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| ornithine carbamoyltransferase activity | 0.001063908 | GO:0004585 |
| arginine biosynthetic process via ornithine | 0.001595391 | GO:0042450 |
| urea cycle | 0.001595391 | plantCyc |
| L-citrulline degradation | 0.004048762 | plantCyc |
| L-arginine biosynthesis I (via L-ornithine) | 0.004721811 | plantCyc |
| L-arginine biosynthesis II (acetyl cycle) | 0.005663244 | plantCyc |
| ornithine-citrulline shuttle | 0.005663244 | plantCyc |
| amino acid binding | 0.010609255 | GO:0016597 |
| Biosynthesis of amino acids | 0.016554997 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T004000 | - | - |
| CRO_T020148 | - | - |
| CRO_T020605 | - | - |
| CRO_T026431 | - | - |
| CRO_T027798 | - | - |
| CRO_T033479 | AT1G75330 (2.00E-162) | OTC|ornithine carbamoyltransferase |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000121 | Biosynthesis of amino acids ornithine carbamoyltransferase activity histidinol dehydrogenase activity L-citrulline degradation L-arginine biosynthesis I (via L-ornithine) L-arginine biosynthesis II (acetyl cycle) L-histidine biosynthesis ornithine-citrulline shuttle urea cycle organic acid transmembrane transporter activity | details |
| TissueCFM000313 | arginine biosynthetic process via ornithine urea cycle ornithine carbamoyltransferase activity L-citrulline degradation L-arginine biosynthesis I (via L-ornithine) L-arginine biosynthesis II (acetyl cycle) ornithine-citrulline shuttle | details |
| TissueCFM000443 | ornithine carbamoyltransferase activity arginine biosynthetic process via ornithine urea cycle L-citrulline degradation L-arginine biosynthesis I (via L-ornithine) L-arginine biosynthesis II (acetyl cycle) ornithine-citrulline shuttle amino acid binding Biosynthesis of amino acids | details |
| TissueCFM000447 | post-embryonic root development arginine biosynthetic process via ornithine urea cycle L-citrulline degradation L-arginine biosynthesis I (via L-ornithine) ornithine carbamoyltransferase activity L-arginine biosynthesis II (acetyl cycle) ornithine-citrulline shuttle ribosome biogenesis | details |
| TissueCFM000506 | Protein_kinases_phosphatases, PPC:4.5.2: CDC2 Like Kinase Family redox enzymes that act in conjunction with CAZymes, Auxiliary Activities: AA7 L-citrulline degradation cyclin-dependent protein serine/threonine kinase activity RNA polymerase II carboxy-terminal domain kinase activity ornithine carbamoyltransferase activity 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity | details |
| TissueCFM000562 | details | |
| TissueCFM000603 | post-embryonic root development MAPK signaling pathway - yeast protein domain specific binding | details |
| TissueCFM000667 | post-embryonic root development arginine biosynthetic process via ornithine urea cycle L-citrulline degradation L-arginine biosynthesis I (via L-ornithine) ornithine carbamoyltransferase activity L-arginine biosynthesis II (acetyl cycle) ornithine-citrulline shuttle | details |
| TissueCFM000676 | ornithine carbamoyltransferase activity arginine biosynthetic process via ornithine urea cycle L-citrulline degradation L-arginine biosynthesis I (via L-ornithine) L-arginine biosynthesis II (acetyl cycle) ornithine-citrulline shuttle clathrin vesicle coat Transcription_related, Transcription factor: FAR1 Biosynthesis of amino acids amino acid binding vesicle-mediated transport | details |
| TissueCFM000782 | ornithine carbamoyltransferase activity arginine biosynthetic process via ornithine urea cycle L-citrulline degradation L-arginine biosynthesis I (via L-ornithine) L-arginine biosynthesis II (acetyl cycle) ornithine-citrulline shuttle amino acid binding Biosynthesis of amino acids | details |
| TissueCFM000944 | ornithine carbamoyltransferase activity arginine biosynthetic process via ornithine urea cycle L-citrulline degradation L-arginine biosynthesis I (via L-ornithine) L-arginine biosynthesis II (acetyl cycle) ornithine-citrulline shuttle amino acid binding Biosynthesis of amino acids | details |
| TissueCFM000945 | 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity Fatty acid metabolism fatty acid elongation -- saturated octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) stearate biosynthesis II (bacteria and plants) NAD binding palmitate biosynthesis II (bacteria and plants) fatty acid biosynthetic process | details |
| TissueCFM001020 | ornithine carbamoyltransferase activity 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity arginine biosynthetic process via ornithine urea cycle L-citrulline degradation fatty acid elongation -- saturated L-arginine biosynthesis I (via L-ornithine) L-arginine biosynthesis II (acetyl cycle) ornithine-citrulline shuttle octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) stearate biosynthesis II (bacteria and plants) amino acid binding NAD binding Biosynthesis of amino acids Fatty acid metabolism palmitate biosynthesis II (bacteria and plants) fatty acid biosynthetic process | details |
| TissueCFM001410 | ornithine carbamoyltransferase activity arginine biosynthetic process via ornithine 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity urea cycle L-citrulline degradation fatty acid elongation -- saturated L-arginine biosynthesis I (via L-ornithine) L-arginine biosynthesis II (acetyl cycle) ornithine-citrulline shuttle octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) stearate biosynthesis II (bacteria and plants) amino acid binding NAD binding Biosynthesis of amino acids Fatty acid metabolism palmitate biosynthesis II (bacteria and plants) | details |
Expression profiles
 Show details about module gene expression profiling |