TissueCFM001020's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| ornithine carbamoyltransferase activity | 0.004432362 | GO:0004585 |
| 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity | 0.0066454 | GO:0004316 |
| arginine biosynthetic process via ornithine | 0.0066454 | GO:0042450 |
| urea cycle | 0.0066454 | plantCyc |
| L-citrulline degradation | 0.013542133 | plantCyc |
| fatty acid elongation -- saturated | 0.01577676 | plantCyc |
| L-arginine biosynthesis I (via L-ornithine) | 0.01577676 | plantCyc |
| L-arginine biosynthesis II (acetyl cycle) | 0.01577676 | plantCyc |
| ornithine-citrulline shuttle | 0.01577676 | plantCyc |
| octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) | 0.020267632 | plantCyc |
| stearate biosynthesis II (bacteria and plants) | 0.027828506 | plantCyc |
| amino acid binding | 0.029416683 | GO:0016597 |
| NAD binding | 0.036291537 | GO:0051287 |
| Biosynthesis of amino acids | 0.037092527 | KEGG pathway |
| Fatty acid metabolism | 0.037092527 | KEGG pathway |
| palmitate biosynthesis II (bacteria and plants) | 0.042605643 | plantCyc |
| fatty acid biosynthetic process | 0.049116079 | GO:0006633 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002166 | - | - |
| CRO_T002462 | - | - |
| CRO_T005605 | - | - |
| CRO_T014033 | AT4G20050 (1.00E-14) | QRT3|QUARTET 3 |
| CRO_T016474 | - | - |
| CRO_T028218 | - | - |
| CRO_T028501 | AT2G30670 (7.00E-25) | NAD(P)-binding Rossmann-fold superfamily protein |
| CRO_T033479 | AT1G75330 (2.00E-162) | OTC|ornithine carbamoyltransferase |
| CRO_T033733 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000121 | Biosynthesis of amino acids ornithine carbamoyltransferase activity histidinol dehydrogenase activity L-citrulline degradation L-arginine biosynthesis I (via L-ornithine) L-arginine biosynthesis II (acetyl cycle) L-histidine biosynthesis ornithine-citrulline shuttle urea cycle organic acid transmembrane transporter activity | details |
| TissueCFM000197 | NAD binding histidinol dehydrogenase activity | details |
| TissueCFM000313 | arginine biosynthetic process via ornithine urea cycle ornithine carbamoyltransferase activity L-citrulline degradation L-arginine biosynthesis I (via L-ornithine) L-arginine biosynthesis II (acetyl cycle) ornithine-citrulline shuttle | details |
| TissueCFM000443 | ornithine carbamoyltransferase activity arginine biosynthetic process via ornithine urea cycle L-citrulline degradation L-arginine biosynthesis I (via L-ornithine) L-arginine biosynthesis II (acetyl cycle) ornithine-citrulline shuttle amino acid binding Biosynthesis of amino acids | details |
| TissueCFM000447 | post-embryonic root development arginine biosynthetic process via ornithine urea cycle L-citrulline degradation L-arginine biosynthesis I (via L-ornithine) ornithine carbamoyltransferase activity L-arginine biosynthesis II (acetyl cycle) ornithine-citrulline shuttle ribosome biogenesis | details |
| TissueCFM000506 | Protein_kinases_phosphatases, PPC:4.5.2: CDC2 Like Kinase Family redox enzymes that act in conjunction with CAZymes, Auxiliary Activities: AA7 L-citrulline degradation cyclin-dependent protein serine/threonine kinase activity RNA polymerase II carboxy-terminal domain kinase activity ornithine carbamoyltransferase activity 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity | details |
| TissueCFM000667 | post-embryonic root development arginine biosynthetic process via ornithine urea cycle L-citrulline degradation L-arginine biosynthesis I (via L-ornithine) ornithine carbamoyltransferase activity L-arginine biosynthesis II (acetyl cycle) ornithine-citrulline shuttle | details |
| TissueCFM000676 | ornithine carbamoyltransferase activity arginine biosynthetic process via ornithine urea cycle L-citrulline degradation L-arginine biosynthesis I (via L-ornithine) L-arginine biosynthesis II (acetyl cycle) ornithine-citrulline shuttle clathrin vesicle coat Transcription_related, Transcription factor: FAR1 Biosynthesis of amino acids amino acid binding vesicle-mediated transport | details |
| TissueCFM000782 | ornithine carbamoyltransferase activity arginine biosynthetic process via ornithine urea cycle L-citrulline degradation L-arginine biosynthesis I (via L-ornithine) L-arginine biosynthesis II (acetyl cycle) ornithine-citrulline shuttle amino acid binding Biosynthesis of amino acids | details |
| TissueCFM000944 | ornithine carbamoyltransferase activity arginine biosynthetic process via ornithine urea cycle L-citrulline degradation L-arginine biosynthesis I (via L-ornithine) L-arginine biosynthesis II (acetyl cycle) ornithine-citrulline shuttle amino acid binding Biosynthesis of amino acids | details |
| TissueCFM000945 | 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity Fatty acid metabolism fatty acid elongation -- saturated octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) stearate biosynthesis II (bacteria and plants) NAD binding palmitate biosynthesis II (bacteria and plants) fatty acid biosynthetic process | details |
| TissueCFM001048 | ornithine carbamoyltransferase activity arginine biosynthetic process via ornithine urea cycle L-citrulline degradation L-arginine biosynthesis I (via L-ornithine) L-arginine biosynthesis II (acetyl cycle) ornithine-citrulline shuttle amino acid binding Biosynthesis of amino acids | details |
| TissueCFM001410 | ornithine carbamoyltransferase activity arginine biosynthetic process via ornithine 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity urea cycle L-citrulline degradation fatty acid elongation -- saturated L-arginine biosynthesis I (via L-ornithine) L-arginine biosynthesis II (acetyl cycle) ornithine-citrulline shuttle octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) stearate biosynthesis II (bacteria and plants) amino acid binding NAD binding Biosynthesis of amino acids Fatty acid metabolism palmitate biosynthesis II (bacteria and plants) | details |
Expression profiles
 Show details about module gene expression profiling |