TissueCFM001088's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc | 4.32E-06 | cazy family |
| stachyose biosynthesis | 1.51E-05 | plantCyc |
| Galactose metabolism | 0.000122205 | KEGG pathway |
| spermidine:oxygen oxidoreductase (3-aminopropanal-forming) activity | 0.002257322 | GO:0052902 |
| N1-acetylspermine:oxygen oxidoreductase (3-acetamidopropanal-forming) activity | 0.002257322 | GO:0052903 |
| N1-acetylspermidine:oxygen oxidoreductase (3-acetamidopropanal-forming) activity | 0.002257322 | GO:0052904 |
| spermine:oxygen oxidoreductase (spermidine-forming) activity | 0.002257322 | GO:0052901 |
| spermine and spermidine degradation III | 0.00633397 | plantCyc |
| stachyose degradation | 0.007141268 | plantCyc |
| substrate-specific transmembrane transporter activity | 0.015332788 | GO:0022891 |
| Arginine and proline metabolism | 0.019505234 | KEGG pathway |
| Cell cycle | 0.019505234 | KEGG pathway |
| Glycerolipid metabolism | 0.019505234 | KEGG pathway |
| beta-glucosidase activity | 0.024024791 | GO:0008422 |
| carbohydrate transport | 0.031310746 | GO:0008643 |
| glycosyl compound metabolic process | 0.031310746 | GO:1901657 |
| 2-alkenal reductase [NAD(P)] activity | 0.048748898 | GO:0032440 |
| transferase activity, transferring glycosyl groups | 0.049346573 | GO:0016757 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003184 | AT1G55740 (0) | AtSIP1|seed imbibition 1; RS1|raffinose synthase 1 |
| CRO_T011764 | AT2G32860 (7.00E-15) | BGLU33|beta glucosidase 33 |
| CRO_T019954 | AT1G67300 (3.00E-175) | Major facilitator superfamily protein |
| CRO_T028938 | AT3G59550 (6.00E-74) | ATRAD21.2|SISTER CHROMATID COHESION 1 PROTEIN 3 |
| CRO_T029492 | AT3G10390 (6.00E-49) | FLD|FLOWERING LOCUS D |
| CRO_T033597 | AT3G57520 (0) | AtSIP2|seed imbibition 2; RS2|raffinose synthase 2 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000433 | N1-acetylspermidine:oxygen oxidoreductase (3-acetamidopropanal-forming) activity rRNA (cytosine-N4-)-methyltransferase activity spermine:oxygen oxidoreductase (spermidine-forming) activity N1-acetylspermine:oxygen oxidoreductase (3-acetamidopropanal-forming) activity spermidine:oxygen oxidoreductase (3-aminopropanal-forming) activity spermine and spermidine degradation III Arginine and proline metabolism rRNA base methylation | details |
| TissueCFM000737 | heterotrimeric G-protein complex Glycerolipid metabolism transmembrane transport G-protein coupled receptor signaling pathway signal transducer activity substrate-specific transmembrane transporter activity beta-glucosidase activity formation of glycosidic bonds, GlycosylTransferases: GTnc hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc protein polyubiquitination carbohydrate transport glycosyl compound metabolic process integral component of membrane protein ubiquitination involved in ubiquitin-dependent protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process ubiquitin protein ligase activity 2-alkenal reductase [NAD(P)] activity | details |
| TissueCFM001561 | N1-acetylspermine:oxygen oxidoreductase (3-acetamidopropanal-forming) activity spermidine:oxygen oxidoreductase (3-aminopropanal-forming) activity N1-acetylspermidine:oxygen oxidoreductase (3-acetamidopropanal-forming) activity spermine:oxygen oxidoreductase (spermidine-forming) activity spermine and spermidine degradation III Arginine and proline metabolism | details |
Expression profiles
 Show details about module gene expression profiling |