TissueCFM000433's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| N1-acetylspermidine:oxygen oxidoreductase (3-acetamidopropanal-forming) activity | 0.002423568 | GO:0052904 |
| rRNA (cytosine-N4-)-methyltransferase activity | 0.002423568 | GO:0071424 |
| spermine:oxygen oxidoreductase (spermidine-forming) activity | 0.002423568 | GO:0052901 |
| N1-acetylspermine:oxygen oxidoreductase (3-acetamidopropanal-forming) activity | 0.002423568 | GO:0052903 |
| spermidine:oxygen oxidoreductase (3-aminopropanal-forming) activity | 0.002423568 | GO:0052902 |
| spermine and spermidine degradation III | 0.002686583 | plantCyc |
| Arginine and proline metabolism | 0.006190471 | KEGG pathway |
| rRNA base methylation | 0.010233311 | GO:0070475 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001001 | AT2G30695 (1.00E-39) | unknown protein |
| CRO_T001474 | AT1G68930 (4.00E-119) | pentatricopeptide (PPR) repeat-containing protein |
| CRO_T011158 | AT4G31080 (2.00E-99) | Protein of unknown function (DUF2296) |
| CRO_T015413 | AT1G06150 (9.00E-29) | EMB1444|EMBRYO DEFECTIVE 1444 |
| CRO_T020989 | AT5G10910 (6.00E-121) | mraW methylase family protein |
| CRO_T023421 | AT4G11060 (2.00E-67) | MTSSB|mitochondrially targeted single-stranded DNA binding protein |
| CRO_T029492 | AT3G10390 (6.00E-49) | FLD|FLOWERING LOCUS D |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000663 | ruffle membrane regulation of ruffle assembly microgametogenesis regulation of cell cycle response to starvation lysine biosynthetic process via diaminopimelate megagametogenesis systemic acquired resistance, salicylic acid mediated signaling pathway L-lysine biosynthesis VI phospholipid remodeling (phosphatidylcholine, yeast) Biosynthesis of amino acids phosphatidylcholine acyl editing phospholipases L,L-diaminopimelate aminotransferase activity lipid catabolic process protein polyubiquitination response to cytokinin protein ubiquitination involved in ubiquitin-dependent protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process vesicle-mediated transport phosphatidylinositol binding | details |
| TissueCFM000681 | Protein_kinases_phosphatases, PPC:4.1.3: MAP2K 1-phosphatidylinositol 4-kinase activity MAP kinase kinase activity 3-phosphoinositide biosynthesis chlorogenic acid biosynthesis I chlorogenic acid biosynthesis II D-myo-inositol (1,4,5)-trisphosphate biosynthesis MAPK signaling pathway - plant receptor signaling protein serine/threonine kinase activity Phenylpropanoid biosynthesis | details |
| TissueCFM001088 | hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc stachyose biosynthesis Galactose metabolism spermidine:oxygen oxidoreductase (3-aminopropanal-forming) activity N1-acetylspermine:oxygen oxidoreductase (3-acetamidopropanal-forming) activity N1-acetylspermidine:oxygen oxidoreductase (3-acetamidopropanal-forming) activity spermine:oxygen oxidoreductase (spermidine-forming) activity spermine and spermidine degradation III stachyose degradation substrate-specific transmembrane transporter activity Arginine and proline metabolism Cell cycle Glycerolipid metabolism beta-glucosidase activity carbohydrate transport glycosyl compound metabolic process 2-alkenal reductase [NAD(P)] activity transferase activity, transferring glycosyl groups | details |
| TissueCFM001536 | Cytochrome_P450, Cytochrome P450: CYP85A brassinosteroid biosynthesis I pyrimidine deoxyribonucleosides salvage rRNA (cytosine-N4-)-methyltransferase activity nucleobase-containing compound biosynthetic process Brassinosteroid biosynthesis Pyrimidine metabolism phosphate-containing compound metabolic process rRNA base methylation brassinosteroid homeostasis sterol metabolic process brassinosteroid biosynthetic process multicellular organism development | details |
| TissueCFM001561 | N1-acetylspermine:oxygen oxidoreductase (3-acetamidopropanal-forming) activity spermidine:oxygen oxidoreductase (3-aminopropanal-forming) activity N1-acetylspermidine:oxygen oxidoreductase (3-acetamidopropanal-forming) activity spermine:oxygen oxidoreductase (spermidine-forming) activity spermine and spermidine degradation III Arginine and proline metabolism | details |
| TissueCFM001724 | RNA lariat debranching enzyme activity cellular protein localization Transcription_related, Transcription factor: WRKY | details |
| TissueCFM001844 | Transcription_related, Transcription factor: EIL rRNA (cytosine-N4-)-methyltransferase activity diaminopimelate decarboxylase activity organic acid transmembrane transporter activity rRNA base methylation organic acid transmembrane transport lysine biosynthetic process via diaminopimelate L-lysine biosynthesis VI phospholipid remodeling (phosphatidylcholine, yeast) phosphatidylcholine acyl editing phospholipases lipid catabolic process Biosynthesis of amino acids MAPK signaling pathway - plant | details |
| TissueCFM001849 | protein K48-linked deubiquitination positive regulation of intracellular protein transport protein K63-linked deubiquitination positive regulation of vacuole organization cellular response to starvation ethylene biosynthesis I (plants) intracellular transport vacuole organization Ubiquitin_Proteasome_system, DUB: JAMM Endocytosis dihydrokaempferol 4-reductase activity | details |
Expression profiles
 Show details about module gene expression profiling |