TissueCFM001106's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.002323963 | cazy family |
| 3'-tyrosyl-DNA phosphodiesterase activity | 0.002955301 | GO:0017005 |
| tRNA dihydrouridine synthase activity | 0.003693308 | GO:0017150 |
| tRNA dihydrouridine synthesis | 0.003900421 | GO:0002943 |
| Transcription_related, Transcription factor: C3H | 0.013515812 | TF family |
| DNA repair | 0.031548419 | GO:0006281 |
| flavin adenine dinucleotide binding | 0.046957595 | GO:0050660 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T008750 | AT4G38890 (0) | FMN-linked oxidoreductases superfamily protein |
| CRO_T014442 | AT1G62590 (2.00E-42) | PPR-AC|Pentatricopeptide (PPR) Adenylate cyclase |
| CRO_T014863 | AT5G61990 (1.00E-47) | Pentatricopeptide repeat (PPR) superfamily protein |
| CRO_T020665 | AT1G63130 (1.00E-26) | Tetratricopeptide repeat (TPR)-like superfamily protein |
| CRO_T024357 | AT1G16840 (1.00E-19) | unknown protein |
| CRO_T029933 | AT5G15170 (0) | TDP1|tyrosyl-DNA phosphodiesterase 1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000508 | 3'-tyrosyl-DNA phosphodiesterase activity specification of floral organ identity regulation of alternative mRNA splicing, via spliceosome RNA catabolic process RNA helicase activity RNA degradation seed germination regulation of gene expression Transcription_related, Transcription regulator: mTERF RNA secondary structure unwinding cytoplasmic mRNA processing body nucleoplasm DNA repair | details |
| TissueCFM001547 | response to UV tRNA dihydrouridine synthesis Basal transcription factors nucleotide-excision repair lignin catabolic process response to heat DNA duplex unwinding tRNA dihydrouridine synthase activity ATP-dependent DNA helicase activity hydroquinone:oxygen oxidoreductase activity Transcription_related, Transcription factor: C3H Transcription_related, Transcription regulator: SNF2 Transcription_related, Transcription factor: ERF oxidoreductase activity, oxidizing metal ions oxidation-reduction process | details |
| TissueCFM001548 | response to UV tRNA dihydrouridine synthesis Basal transcription factors nucleotide-excision repair tRNA dihydrouridine synthase activity ATP-dependent DNA helicase activity response to heat DNA duplex unwinding Transcription_related, Transcription factor: C3H Transcription_related, Transcription regulator: SNF2 | details |
Expression profiles
 Show details about module gene expression profiling |