TissueCFM001547's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| response to UV | 0.006435695 | GO:0009411 |
| tRNA dihydrouridine synthesis | 0.006435695 | GO:0002943 |
| Basal transcription factors | 0.007249122 | KEGG pathway |
| nucleotide-excision repair | 0.010721403 | GO:0006289 |
| lignin catabolic process | 0.014990015 | GO:0046274 |
| response to heat | 0.014990015 | GO:0009408 |
| DNA duplex unwinding | 0.014990015 | GO:0032508 |
| tRNA dihydrouridine synthase activity | 0.018050574 | GO:0017150 |
| ATP-dependent DNA helicase activity | 0.018050574 | GO:0004003 |
| hydroquinone:oxygen oxidoreductase activity | 0.036058494 | GO:0052716 |
| Transcription_related, Transcription factor: C3H | 0.037543922 | TF family |
| Transcription_related, Transcription regulator: SNF2 | 0.037543922 | TF family |
| Transcription_related, Transcription factor: ERF | 0.045986104 | TF family |
| oxidoreductase activity, oxidizing metal ions | 0.047263877 | GO:0016722 |
| oxidation-reduction process | 0.048990721 | GO:0055114 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T008750 | AT4G38890 (0) | FMN-linked oxidoreductases superfamily protein |
| CRO_T014132 | AT2G40370 (0) | LAC5|laccase 5 |
| CRO_T014442 | AT1G62590 (2.00E-42) | PPR-AC|Pentatricopeptide (PPR) Adenylate cyclase |
| CRO_T014525 | AT1G17620 (7.00E-44) | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family |
| CRO_T019558 | AT1G03190 (0) | ATXPD|XERODERMA PIGMENTOSUM GROUP D; UVH6|ULTRAVIOLET HYPERSENSITIVE 6 |
| CRO_T023407 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000868 | response to UV regulation of phragmoplast microtubule organization regulation of mitotic spindle organization positive regulation of cytokinesis kinetochore microtubule cell plate assembly nucleotide-excision repair vacuolar transport ATP-dependent DNA helicase activity embryo sac development DNA duplex unwinding response to heat Transcription_related, Transcription regulator: SNF2 pollen development | details |
| TissueCFM001106 | formation of glycosidic bonds, GlycosylTransferases: GTnc 3'-tyrosyl-DNA phosphodiesterase activity tRNA dihydrouridine synthase activity tRNA dihydrouridine synthesis Transcription_related, Transcription factor: C3H DNA repair flavin adenine dinucleotide binding | details |
| TissueCFM001548 | response to UV tRNA dihydrouridine synthesis Basal transcription factors nucleotide-excision repair tRNA dihydrouridine synthase activity ATP-dependent DNA helicase activity response to heat DNA duplex unwinding Transcription_related, Transcription factor: C3H Transcription_related, Transcription regulator: SNF2 | details |
Expression profiles
 Show details about module gene expression profiling |