TissueCFM001162's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| polyamine transmembrane transport | 0.007798537 | GO:1902047 |
| Transcription_related, Transcription factor: C3H | 0.009010541 | TF family |
| Fanconi anemia pathway | 0.013806304 | KEGG pathway |
| DNA metabolic process | 0.013936293 | GO:0006259 |
| amino acid transmembrane transport | 0.013936293 | GO:0003333 |
| polyamine transmembrane transporter activity | 0.019265615 | GO:0015203 |
| L-amino acid transmembrane transporter activity | 0.019265615 | GO:0015179 |
| organic cyclic compound binding | 0.049887474 | GO:0097159 |
| heterocyclic compound binding | 0.049887474 | GO:1901363 |
| antiporter activity | 0.049887474 | GO:0015297 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T010304 | AT1G67500 (3.00E-125) | ATREV3|recovery protein 3 |
| CRO_T010422 | AT2G34357 (8.00E-69) | ARM repeat superfamily protein |
| CRO_T019000 | AT5G56900 (2.00E-134) | CwfJ-like family protein / zinc finger (CCCH-type) family protein |
| CRO_T024517 | AT3G59300 (6.00E-27) | Pentatricopeptide repeat (PPR) superfamily protein |
| CRO_T025269 | AT3G13620 (1.00E-161) | PUT4|POLYAMINE UPTAKE TRANSPORTER 4 |
| CRO_T031880 | AT4G10250 (6.00E-14) | ATHSP22.0|HSP20-like chaperones superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000920 | xylan biosynthetic process phosphate acquisition Transcription_related, Transcription regulator: SWI/SNF-BAF60b Transcription_related, Transcription factor: C3H | details |
| TissueCFM001065 | polyamine transmembrane transport nucleocytoplasmic transporter activity polyamine transmembrane transporter activity L-amino acid transmembrane transporter activity amino acid transmembrane transport nuclear pore integral component of plasma membrane helicase activity antiporter activity | details |
| TissueCFM001163 | Non-homologous end-joining DNA ligase activity Fanconi anemia pathway xylan biosynthetic process cellular macromolecule biosynthetic process Transcription_related, Transcription factor: C3H mRNA surveillance pathway DNA metabolic process flavonoid biosynthetic process DNA repair flavonoid glucuronidation | details |
| TissueCFM001395 | Transcription_related, Transcription factor: C3H Fanconi anemia pathway very long chain fatty acid biosynthesis I very long chain fatty acid biosynthesis II oxidoreductase activity, acting on the CH-CH group of donors DNA metabolic process lipid metabolic process | details |
| TissueCFM001430 | intrinsic component of membrane COPII vesicle coat positive regulation of biological process glycerophospholipid metabolic process red or far-red light signaling pathway response to far red light xylan biosynthetic process Transcription_related, Transcription factor: FAR1 Fanconi anemia pathway Glycerophospholipid metabolism diacylglycerol and triacylglycerol biosynthesis phosphatidylcholine acyl editing phospholipid remodeling (phosphatidylcholine, yeast) DNA metabolic process ER to Golgi vesicle-mediated transport O-acyltransferase activity heterocyclic compound binding organic cyclic compound binding | details |
Expression profiles
 Show details about module gene expression profiling |