TissueCFM000920's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| xylan biosynthetic process | 0.001595037 | GO:0045492 |
| phosphate acquisition | 0.005131975 | plantCyc |
| Transcription_related, Transcription regulator: SWI/SNF-BAF60b | 0.011694348 | TF family |
| Transcription_related, Transcription factor: C3H | 0.024778988 | TF family |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T013159 | - | - |
| CRO_T014420 | AT1G59453 (0) | B-block binding subunit of TFIIIC |
| CRO_T015194 | AT5G67210 (7.00E-82) | IRX15-L|IRX15-LIKE |
| CRO_T017828 | AT5G08430 (2.00E-33) | SWIB/MDM2 domain; Plus-3; GYF |
| CRO_T019000 | AT5G56900 (2.00E-134) | CwfJ-like family protein / zinc finger (CCCH-type) family protein |
| CRO_T020876 | AT1G19290 (2.00E-54) | Pentatricopeptide repeat (PPR) superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000339 | Kdo transfer to lipid IVA I formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: Tify Lipopolysaccharide biosynthesis xylan biosynthetic process | details |
| TissueCFM000743 | Ubiquitin_Proteasome_system, E2: UBC | details |
| TissueCFM001162 | polyamine transmembrane transport Transcription_related, Transcription factor: C3H Fanconi anemia pathway DNA metabolic process amino acid transmembrane transport polyamine transmembrane transporter activity L-amino acid transmembrane transporter activity organic cyclic compound binding heterocyclic compound binding antiporter activity | details |
| TissueCFM001163 | Non-homologous end-joining DNA ligase activity Fanconi anemia pathway xylan biosynthetic process cellular macromolecule biosynthetic process Transcription_related, Transcription factor: C3H mRNA surveillance pathway DNA metabolic process flavonoid biosynthetic process DNA repair flavonoid glucuronidation | details |
| TissueCFM001210 | Fanconi anemia pathway cellular protein modification process phosphate-containing compound metabolic process xylan biosynthetic process DNA biosynthetic process DNA repair | details |
| TissueCFM001395 | Transcription_related, Transcription factor: C3H Fanconi anemia pathway very long chain fatty acid biosynthesis I very long chain fatty acid biosynthesis II oxidoreductase activity, acting on the CH-CH group of donors DNA metabolic process lipid metabolic process | details |
| TissueCFM001430 | intrinsic component of membrane COPII vesicle coat positive regulation of biological process glycerophospholipid metabolic process red or far-red light signaling pathway response to far red light xylan biosynthetic process Transcription_related, Transcription factor: FAR1 Fanconi anemia pathway Glycerophospholipid metabolism diacylglycerol and triacylglycerol biosynthesis phosphatidylcholine acyl editing phospholipid remodeling (phosphatidylcholine, yeast) DNA metabolic process ER to Golgi vesicle-mediated transport O-acyltransferase activity heterocyclic compound binding organic cyclic compound binding | details |
| TissueCFM001501 | replication fork protection complex GINS complex xylan biosynthetic process double-strand break repair via break-induced replication DNA replication initiation DNA duplex unwinding 3'-5' DNA helicase activity ATP-dependent helicase activity RNA degradation Spliceosome | details |
| TissueCFM001598 | polysaccharide biosynthetic process xylan biosynthetic process homogalacturonan biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc transferase activity, transferring glycosyl groups | details |
Expression profiles
 Show details about module gene expression profiling |