TissueCFM001180's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| protein depalmitoylation | 0.005888526 | GO:0002084 |
| negative regulation of DNA endoreduplication | 0.005888526 | GO:0032876 |
| anaphase-promoting complex-dependent catabolic process | 0.005888526 | GO:0031145 |
| regulation of mitotic metaphase/anaphase transition | 0.005888526 | GO:0030071 |
| protein K11-linked ubiquitination | 0.005888526 | GO:0070979 |
| negative regulation of photomorphogenesis | 0.005888526 | GO:0010100 |
| nuclear body | 0.008992613 | GO:0016604 |
| nuclear pore outer ring | 0.008992613 | GO:0031080 |
| anaphase-promoting complex | 0.008992613 | GO:0005680 |
| cell proliferation | 0.00924998 | GO:0008283 |
| mitotic nuclear division | 0.010298831 | GO:0007067 |
| palmitoyl-(protein) hydrolase activity | 0.010339733 | GO:0008474 |
| phloem or xylem histogenesis | 0.011113735 | GO:0010087 |
| benzoate biosynthesis I (CoA-dependent, β-oxidative) | 0.011120806 | plantCyc |
| carboxylic ester hydrolase activity | 0.012546116 | GO:0052689 |
| ribosome biogenesis | 0.018220743 | GO:0042254 |
| chloroplast | 0.022313321 | GO:0009507 |
| cell division | 0.022955943 | GO:0051301 |
| RNA transport | 0.040243127 | KEGG pathway |
| Ubiquitin mediated proteolysis | 0.040243127 | KEGG pathway |
| GTPase activity | 0.048414291 | GO:0003924 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T004281 | AT2G18290 (9.00E-74) | APC10|anaphase promoting complex 10; EMB2783|EMBRYO DEFECTIVE 2783 |
| CRO_T009237 | AT1G52700 (3.00E-17) | alpha/beta-Hydrolases superfamily protein |
| CRO_T018197 | AT1G69935 (3.00E-16) | SHW1|SHORT HYPOCOTYL IN WHITE LIGHT1 |
| CRO_T023194 | AT4G30840 (2.00E-106) | Transducin/WD40 repeat-like superfamily protein |
| CRO_T023988 | AT2G41670 (1.00E-150) | SIN2|SHORT INTEGUMENT 2 |
| CRO_T028236 | AT1G05430 (2.00E-13) | unknown protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000985 | caffeoyl-CoA O-methyltransferase activity mannose-1-phosphate guanylyltransferase (GDP) activity chrysoeriol biosynthesis GDP-glucose biosynthesis GDP-mannose biosynthesis gossypetin metabolism methylquercetin biosynthesis polymethylated quercetin biosynthesis quercetin sulfate biosynthesis scopoletin biosynthesis UDP-D-galacturonate biosynthesis II (from D-galacturonate) Phenylalanine metabolism Fructose and mannose metabolism L-ascorbate biosynthesis I (L-galactose pathway) phosphotransferase activity, alcohol group as acceptor chlorogenic acid biosynthesis I Amino sugar and nucleotide sugar metabolism syringetin biosynthesis phenylpropanoids methylation (ice plant) suberin monomers biosynthesis Phenylpropanoid biosynthesis microtubule-based movement biosynthetic process ribosome biogenesis | details |
| TissueCFM001021 | MutLalpha complex chiasma Transcription_related, Transcription factor: Whirly synaptonemal complex nuclear body anaphase-promoting complex L-valine degradation I nuclear chromatin anaphase-promoting complex-dependent catabolic process regulation of mitotic metaphase/anaphase transition negative regulation of DNA endoreduplication protein K11-linked ubiquitination cell proliferation mitotic recombination Mismatch repair phloem or xylem histogenesis seed development mitotic nuclear division seed germination mismatched DNA binding cell division pollen development Transcription_related, Transcription factor: C3H single-stranded DNA binding | details |
Expression profiles
 Show details about module gene expression profiling |