TissueCFM000985's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| caffeoyl-CoA O-methyltransferase activity | 0.010306596 | GO:0042409 |
| mannose-1-phosphate guanylyltransferase (GDP) activity | 0.010306596 | GO:0008928 |
| chrysoeriol biosynthesis | 0.014857831 | plantCyc |
| GDP-glucose biosynthesis | 0.014857831 | plantCyc |
| GDP-mannose biosynthesis | 0.014857831 | plantCyc |
| gossypetin metabolism | 0.014857831 | plantCyc |
| methylquercetin biosynthesis | 0.014857831 | plantCyc |
| polymethylated quercetin biosynthesis | 0.014857831 | plantCyc |
| quercetin sulfate biosynthesis | 0.014857831 | plantCyc |
| scopoletin biosynthesis | 0.014857831 | plantCyc |
| UDP-D-galacturonate biosynthesis II (from D-galacturonate) | 0.014857831 | plantCyc |
| Phenylalanine metabolism | 0.015911428 | KEGG pathway |
| Fructose and mannose metabolism | 0.019286794 | KEGG pathway |
| L-ascorbate biosynthesis I (L-galactose pathway) | 0.021585685 | plantCyc |
| phosphotransferase activity, alcohol group as acceptor | 0.025176037 | GO:0016773 |
| chlorogenic acid biosynthesis I | 0.0270797 | plantCyc |
| Amino sugar and nucleotide sugar metabolism | 0.030504646 | KEGG pathway |
| syringetin biosynthesis | 0.031648348 | plantCyc |
| phenylpropanoids methylation (ice plant) | 0.040988235 | plantCyc |
| suberin monomers biosynthesis | 0.040988235 | plantCyc |
| Phenylpropanoid biosynthesis | 0.046403961 | KEGG pathway |
| microtubule-based movement | 0.047450627 | GO:0007018 |
| biosynthetic process | 0.047450627 | GO:0009058 |
| ribosome biogenesis | 0.047450627 | GO:0042254 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000447 | AT1G67990 (4.00E-61) | ATTSM1|TAPETUM-SPECIFIC METHYLTRANSFERASE 1 |
| CRO_T013765 | AT1G24460 (2.00E-67) | TNO1|TGN-localized SYP41 interacting protein |
| CRO_T014275 | AT1G21730 (0) | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
| CRO_T020125 | AT2G39770 (0) | CYT1|CYTOKINESIS DEFECTIVE 1; EMB101|EMBRYO DEFECTIVE 101; GMP1|GDP-MANNOSE PYROPHOSPHORYLASE 1; SOZ1|SENSITIVE TO OZONE 1; VTC1|VITAMIN C DEFECTIVE 1 |
| CRO_T023988 | AT2G41670 (1.00E-150) | SIN2|SHORT INTEGUMENT 2 |
| CRO_T026494 | AT3G10700 (2.00E-135) | GalAK|galacturonic acid kinase |
| CRO_T027206 | AT2G37950 (9.00E-11) | RING/FYVE/PHD zinc finger superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000081 | cytosol protein complex assembly protein import into mitochondrial intermembrane space response to fructose mitochondrial fusion mitochondrial protein processing regulation of abscisic acid biosynthetic process tRNA methylthiolation cristae formation abscisic acid biosynthetic process proline biosynthetic process caffeoyl-CoA O-methyltransferase activity xanthoxin dehydrogenase activity N6-threonylcarbomyladenosine methylthiotransferase activity abscisic acid biosynthesis chrysoeriol biosynthesis gossypetin metabolism methylquercetin biosynthesis polymethylated quercetin biosynthesis quercetin sulfate biosynthesis scopoletin biosynthesis 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity Phenylalanine metabolism chlorogenic acid biosynthesis I Carotenoid biosynthesis response to heat syringetin biosynthesis protein peptidyl-prolyl isomerization response to water deprivation | details |
| TissueCFM000514 | L-homoserine biosynthesis anaphase-promoting complex binding ubiquitin-protein transferase activator activity aspartate kinase activity L-lysine biosynthesis VI amino acid binding 2-Oxocarboxylic acid metabolism Ubiquitin mediated proteolysis cellular amino acid biosynthetic process regulation of catalytic activity Ubiquitin_Proteasome_system, E3 adaptor: DWD vesicle-mediated transport | details |
| TissueCFM000573 | UDP-D-galacturonate biosynthesis II (from D-galacturonate) modification-dependent protein catabolic process cellular protein modification process Ubiquitin_Proteasome_system, E1: ThiF NLS-bearing protein import into nucleus Transcription_related, Transcription regulator: SNF2 nucleoplasm cytosol nuclear pore ubiquitin activating enzyme activity Amino sugar and nucleotide sugar metabolism Ubiquitin mediated proteolysis histone binding nuclear localization sequence binding phosphotransferase activity, alcohol group as acceptor | details |
| TissueCFM000727 | inosine-5'-phosphate biosynthesis II phosphoribosylaminoimidazole carboxylase activity phosphoribosylaminoimidazolesuccinocarboxamide synthase activity adenine biosynthetic process 'de novo' IMP biosynthetic process DNA-templated transcription, initiation O-acyltransferase activity Basal transcription factors Glycerophospholipid metabolism response to auxin lipid metabolic process | details |
| TissueCFM001094 | 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I GDP-glucose biosynthesis oxidized GTP and dGTP detoxification GDP-mannose biosynthesis L-ascorbate biosynthesis I (L-galactose pathway) tetrahydrofolate biosynthesis II RIG-I-like receptor signaling pathway MAPK signaling pathway - yeast mannose-1-phosphate guanylyltransferase (GDP) activity homogalacturonan degradation Fructose and mannose metabolism RNA secondary structure unwinding pectin catabolic process microtubule-based movement cell wall modification biosynthetic process mRNA processing negative regulation of catalytic activity hydrolysis of carbohydrate esters, Carbohydrate Esterases: CE8 | details |
| TissueCFM001180 | protein depalmitoylation negative regulation of DNA endoreduplication anaphase-promoting complex-dependent catabolic process regulation of mitotic metaphase/anaphase transition protein K11-linked ubiquitination negative regulation of photomorphogenesis nuclear body nuclear pore outer ring anaphase-promoting complex cell proliferation mitotic nuclear division palmitoyl-(protein) hydrolase activity phloem or xylem histogenesis benzoate biosynthesis I (CoA-dependent, β-oxidative) carboxylic ester hydrolase activity ribosome biogenesis chloroplast cell division RNA transport Ubiquitin mediated proteolysis GTPase activity | details |
| TissueCFM001195 | abscisic acid biosynthesis regulation of abscisic acid biosynthetic process response to fructose abscisic acid biosynthetic process proline biosynthetic process xanthoxin dehydrogenase activity 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity Carotenoid biosynthesis response to heat mRNA splicing, via spliceosome microtubule-based movement response to water deprivation heterocyclic compound binding organic cyclic compound binding microtubule motor activity ATPase activity microtubule binding kinesin complex spliceosomal complex microtubule Spliceosome | details |
| TissueCFM001269 | L-homoserine biosynthesis L-lysine biosynthesis VI tRNA methylthiolation N6-threonylcarbomyladenosine methylthiotransferase activity Arp2/3 complex-mediated actin nucleation aspartate kinase activity Arp2/3 protein complex cellular amino acid biosynthetic process amino acid binding 4 iron, 4 sulfur cluster binding 2-Oxocarboxylic acid metabolism Endocytosis RNA transport | details |
| TissueCFM001817 | mitochondrial fusion mitochondrial protein processing protein complex assembly protein import into mitochondrial intermembrane space cristae formation glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity ubiquitin-protein transferase activator activity anaphase-promoting complex binding glucose metabolic process gluconeogenesis I glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) sucrose biosynthesis I (from photosynthesis) glycolytic process regulation of catalytic activity ATP-dependent peptidase activity metalloendopeptidase activity NADP binding Ubiquitin_Proteasome_system, E3 adaptor: DWD NAD binding Ubiquitin mediated proteolysis | details |
Expression profiles
 Show details about module gene expression profiling |