TissueCFM001193's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Golgi apparatus | 7.48E-05 | GO:0005794 |
| cyanidin diglucoside biosynthesis (acyl-glucose dependent) | 0.002024082 | plantCyc |
| delphinidin diglucoside biosynthesis (acyl-glucose dependent) | 0.002024082 | plantCyc |
| pelargonidin diglucoside biosynthesis (acyl-glucose dependent) | 0.002024082 | plantCyc |
| violdelphin biosynthesis | 0.002024082 | plantCyc |
| plasma membrane | 0.00219424 | GO:0005886 |
| anthocyanidin modification (Arabidopsis) | 0.005259115 | plantCyc |
| hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc | 0.005308548 | cazy family |
| mitochondrial membrane | 0.0121139 | GO:0031966 |
| mitochondrial transport | 0.016088047 | GO:0006839 |
| regulation of signal transduction | 0.017689008 | GO:0009966 |
| Starch and sucrose metabolism | 0.023182294 | KEGG pathway |
| cellular transition metal ion homeostasis | 0.024888615 | GO:0046916 |
| protein processing | 0.024888615 | GO:0016485 |
| metal ion transport | 0.026314312 | GO:0030001 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001097 | AT1G02850 (4.00E-133) | BGLU11|beta glucosidase 11 |
| CRO_T005305 | AT1G14140 (2.00E-46) | UCP3|Uncoupling Protein 3 |
| CRO_T014384 | AT4G27790 (1.00E-28) | Calcium-binding EF hand family protein |
| CRO_T031850 | AT2G36950 (0.000000008) | Heavy metal transport/detoxification superfamily protein |
| CRO_T031851 | - | - |
| CRO_T032705 | AT3G44330 (6.00E-42) | INVOLVED IN: protein processing |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000636 | eugenol and isoeugenol biosynthesis L-glutamine degradation I L-histidine biosynthesis pseudouridine degradation Protein_kinases_phosphatases, PPC:1.6.1: Leucine Rich Repeat Kinase IX Transcription_related, Transcription factor: BES1 DNA N-glycosylase activity beta-N-acetylhexosaminidase activity transferase activity, transferring pentosyl groups Transcription_related, Transcription factor: C2C2-GATA Ubiquitin_Proteasome_system, E1: ThiF THO complex DNA-directed RNA polymerase V complex Golgi apparatus Cul4-RING E3 ubiquitin ligase complex production of ta-siRNAs involved in RNA interference regulation of production of siRNA involved in chromatin silencing by small RNA RNA-directed DNA methylation | details |
| TissueCFM000788 | mitochondrial transport mitochondrial membrane protein phosphatase type 2A complex regulation of protein phosphatase type 2A activity mRNA surveillance pathway protein phosphatase type 2A regulator activity Transcription_related, Transcription factor: WRKY Transcription_related, Transcription regulator: mTERF Transcription_related, Transcription regulator: TRAF Ubiquitin_Proteasome_system, E3 adaptor: BTB | details |
| TissueCFM001456 | Golgi membrane trans-Golgi network inositol pentakisphosphate 2-kinase activity formation of glycosidic bonds, GlycosylTransferases: GTnc inositol pyrophosphates biosynthesis lipid-dependent phytate biosynthesis I (via Ins(1,4,5)P3) lipid-dependent phytate biosynthesis II (via Ins(1,3,4)P3) homogalacturonan biosynthesis 1D-myo-inositol hexakisphosphate biosynthesis III (Spirodela polyrrhiza) polygalacturonate 4-alpha-galacturonosyltransferase activity zinc ion transmembrane transporter activity cytoplasmic, membrane-bounded vesicle transition metal ion binding Amino sugar and nucleotide sugar metabolism Inositol phosphate metabolism metal ion transport cellular transition metal ion homeostasis zinc II ion transmembrane transport pectin biosynthetic process integral component of membrane | details |
| TissueCFM001596 | transition metal ion binding metal ion transport cellular transition metal ion homeostasis | details |
| TissueCFM001737 | Transcription_related, Transcription regulator: HMG GPI-anchor transamidase complex attachment of GPI anchor to protein GPI-anchor transamidase activity Base excision repair Glycosylphosphatidylinositol(GPI)-anchor biosynthesis cell wall organization or biogenesis O-acetyltransferase activity Golgi apparatus | details |
Expression profiles
 Show details about module gene expression profiling |